Hi, I am using TPP 4.7.1 and trying to analyse demo SILAC data but fail detail:
c:\Inetpub\tpp-bin\xinteract (TPP v4.7 POLAR VORTEX rev 1, Build 201405141849 (MinGW)) PPM mode in Accurate Mass Model ... running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" "interact.ipro.pep.xml" -L"7"" Skipping file interact.ipro.pep.xml, which already contains peptideprophet results ... processed altogether 0 results ERROR: output file created, c:/Inetpub/wwwroot/ISB/data/demo3/interact.pep.xml, appears incomplete. Please check the input files for completeness. INFO: Results written to file: c:/Inetpub/wwwroot/ISB/data/demo3/interact.pep.xml command completed in 1 sec running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml"" command completed in 0 sec No single database specified (by -D option or in .pep.xml file). RefreshParser skipped. running: "C:/Inetpub/tpp-bin/ASAPRatioPeptideParser "interact.pep.xml" -lKR -r0.05 -mM147.035K136.10916R166.10941" Error: file update failed (did not find closing tag "</msms_pipeline_analysis>"), check file interact.pep.xml.tmp.a07516 for completeness error: no ASAPRatio data written to file interact.pep.xml command completed in 4 sec running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I c:/Inetpub/wwwroot/ISB/data/demo3/interact.pep.xml" c:/Inetpub/wwwroot/ISB/data/demo3/interact.pep.xml(1) : error 3: XML Parsing error.no element foundat l:1, c:0 This application has requested the Runtime to terminate it in an unusual way. Please contact the application's support team for more information. command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I c:/Inetpub/wwwroot/ISB/data/demo3/interact.pep.xml" failed: Unknown error command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I c:/Inetpub/wwwroot/ISB/data/demo3/interact.pep.xml" exited with non-zero exit code: 255 QUIT - the job is incomplete command "c:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.05 -l7 -PPM -nP -A-lKR-r0.05-mM147.035K136.10916R166.10941 interact.ipro.pep.xml" failed: Unknown error *Command FAILED* RETURN CODE:65280 Kindly Help -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
