Hi
I am trying to install TPP-4.8.0 on our RHEL6.6 and I get an error due to
BOOST. Is there a solution for this bug. Or I just need to install Boost
separately.
Thanks
Amin
libs/iostreams/src/bzip2.cpp:20:56: error: bzlib.h: No such file or
directory
libs/iostreams/src/bzip2.cpp:31: error: ‘BZ_OK’ was not declared in this
scope
libs/iostreams/src/bzip2.cpp:32: error: ‘BZ_RUN_OK’ was not declared in
this
sco
pe
libs/iostreams/src/bzip2.cpp:33: error: ‘BZ_FLUSH_OK’ was not declared in
this
s
cope
libs/iostreams/src/bzip2.cpp:34: error: ‘BZ_FINISH_OK’ was not declared in
this
scope
libs/iostreams/src/bzip2.cpp:35: error: ‘BZ_STREAM_END’ was not declared in
this
scope
libs/iostreams/src/bzip2.cpp:36: error: ‘BZ_SEQUENCE_ERROR’ was not
declared
in
this scope
libs/iostreams/src/bzip2.cpp:37: error: ‘BZ_PARAM_ERROR’ was not declared
in
thi
s scope
libs/iostreams/src/bzip2.cpp:38: error: ‘BZ_MEM_ERROR’ was not declared in
this
scope
libs/iostreams/src/bzip2.cpp:39: error: ‘BZ_DATA_ERROR’ was not declared in
this
scope
libs/iostreams/src/bzip2.cpp:40: error: ‘BZ_DATA_ERROR_MAGIC’ was not
declared
i
n this scope
libs/iostreams/src/bzip2.cpp:41: error: ‘BZ_IO_ERROR’ was not declared in
this
s
cope
libs/iostreams/src/bzip2.cpp:42: error: ‘BZ_UNEXPECTED_EOF’ was not
declared
in
this scope
libs/iostreams/src/bzip2.cpp:43: error: ‘BZ_OUTBUFF_FULL’ was not declared
in
th
is scope
libs/iostreams/src/bzip2.cpp:44: error: ‘BZ_CONFIG_ERROR’ was not declared
in
th
is scope
libs/iostreams/src/bzip2.cpp:48: error: ‘BZ_FINISH’ was not declared in
this
sco
pe
libs/iostreams/src/bzip2.cpp:49: error: ‘BZ_RUN’ was not declared in this
scope
libs/iostreams/src/bzip2.cpp: In static member function ‘static void
boost::iost
reams::bzip2_error::check(int)’:
libs/iostreams/src/bzip2.cpp:62: error: ‘BZ_OK’ was not declared in this
scope
libs/iostreams/src/bzip2.cpp:63: error: ‘BZ_RUN_OK’ was not declared in
this
sco
pe
libs/iostreams/src/bzip2.cpp:64: error: ‘BZ_FLUSH_OK’ was not declared in
this
s
cope
libs/iostreams/src/bzip2.cpp:65: error: ‘BZ_FINISH_OK’ was not declared in
this
scope
libs/iostreams/src/bzip2.cpp:66: error: ‘BZ_STREAM_END’ was not declared in
this
scope
libs/iostreams/src/bzip2.cpp:68: error: ‘BZ_MEM_ERROR’ was not declared in
this
scope
libs/iostreams/src/bzip2.cpp: In constructor
‘boost::iostreams::detail::bzip2_ba
se::bzip2_base(const boost::iostreams::bzip2_params&)’:
libs/iostreams/src/bzip2.cpp:80: error: expected type-specifier before
‘bz_strea
m’
libs/iostreams/src/bzip2.cpp:80: error: expected ‘)’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp: In destructor
‘boost::iostreams::detail::bzip2_bas
e::~bzip2_base()’:
libs/iostreams/src/bzip2.cpp:83: error: expected type-specifier before
‘bz_strea
m’
libs/iostreams/src/bzip2.cpp:83: error: expected ‘>’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:83: error: expected ‘(’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:83: error: ‘bz_stream’ was not declared in
this
sco
pe
libs/iostreams/src/bzip2.cpp:83: error: expected primary-expression before
‘>’
t
oken
libs/iostreams/src/bzip2.cpp:83: error: expected ‘)’ before ‘;’ token
libs/iostreams/src/bzip2.cpp: In member function ‘void
boost::iostreams::detail:
:bzip2_base::before(const char*&, const char*, char*&, char*)’:
libs/iostreams/src/bzip2.cpp:88: error: ‘bz_stream’ was not declared in
this
sco
pe
libs/iostreams/src/bzip2.cpp:88: error: ‘s’ was not declared in this scope
libs/iostreams/src/bzip2.cpp:88: error: expected type-specifier before
‘bz_strea
m’
libs/iostreams/src/bzip2.cpp:88: error: expected ‘>’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:88: error: expected ‘(’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:88: error: expected primary-expression before
‘>’
t
oken
libs/iostreams/src/bzip2.cpp:88: error: expected ‘)’ before ‘;’ token
libs/iostreams/src/bzip2.cpp: In member function ‘void
boost::iostreams::detail:
:bzip2_base::after(const char*&, char*&)’:
libs/iostreams/src/bzip2.cpp:97: error: ‘bz_stream’ was not declared in
this
sco
pe
libs/iostreams/src/bzip2.cpp:97: error: ‘s’ was not declared in this scope
libs/iostreams/src/bzip2.cpp:97: error: expected type-specifier before
‘bz_strea
m’
libs/iostreams/src/bzip2.cpp:97: error: expected ‘>’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:97: error: expected ‘(’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:97: error: expected primary-expression before
‘>’
t
oken
libs/iostreams/src/bzip2.cpp:97: error: expected ‘)’ before ‘;’ token
libs/iostreams/src/bzip2.cpp: In member function ‘int
boost::iostreams::detail::
bzip2_base::check_end(const char*, const char*)’:
libs/iostreams/src/bzip2.cpp:104: error: ‘bz_stream’ was not declared in
this
sc
ope
libs/iostreams/src/bzip2.cpp:104: error: ‘s’ was not declared in this scope
libs/iostreams/src/bzip2.cpp:104: error: expected type-specifier before
‘bz_stre
am’
libs/iostreams/src/bzip2.cpp:104: error: expected ‘>’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:104: error: expected ‘(’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:104: error: expected primary-expression before
‘>’
token
libs/iostreams/src/bzip2.cpp:104: error: expected ‘)’ before ‘;’ token
libs/iostreams/src/bzip2.cpp: In member function ‘void
boost::iostreams::detail:
:bzip2_base::end(bool)’:
libs/iostreams/src/bzip2.cpp:118: error: ‘bz_stream’ was not declared in
this
sc
ope
libs/iostreams/src/bzip2.cpp:118: error: ‘s’ was not declared in this scope
libs/iostreams/src/bzip2.cpp:118: error: expected type-specifier before
‘bz_stre
am’
libs/iostreams/src/bzip2.cpp:118: error: expected ‘>’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:118: error: expected ‘(’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:118: error: expected primary-expression before
‘>’
token
libs/iostreams/src/bzip2.cpp:118: error: expected ‘)’ before ‘;’ token
libs/iostreams/src/bzip2.cpp:121: error: ‘BZ2_bzCompressEnd’ was not
declared
in
this scope
libs/iostreams/src/bzip2.cpp:122: error: ‘BZ2_bzDecompressEnd’ was not
declared
in this scope
libs/iostreams/src/bzip2.cpp: In member function ‘int
boost::iostreams::detail::
bzip2_base::compress(int)’:
libs/iostreams/src/bzip2.cpp:128: error: expected type-specifier before
‘bz_stre
am’
libs/iostreams/src/bzip2.cpp:128: error: expected ‘>’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:128: error: expected ‘(’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:128: error: ‘bz_stream’ was not declared in
this
sc
ope
libs/iostreams/src/bzip2.cpp:128: error: expected primary-expression before
‘>’
token
libs/iostreams/src/bzip2.cpp: In member function ‘int
boost::iostreams::detail::
bzip2_base::decompress()’:
libs/iostreams/src/bzip2.cpp:133: error: expected type-specifier before
‘bz_stre
am’
libs/iostreams/src/bzip2.cpp:133: error: expected ‘>’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:133: error: expected ‘(’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:133: error: ‘bz_stream’ was not declared in
this
sc
ope
libs/iostreams/src/bzip2.cpp:133: error: expected primary-expression before
‘>’
token
libs/iostreams/src/bzip2.cpp: In member function ‘void
boost::iostreams::detail:
:bzip2_base::do_init(bool, void* (*)(void*, int, int), void (*)(void*,
void*),
v
oid*)’:
libs/iostreams/src/bzip2.cpp:144: error: ‘bz_stream’ was not declared in
this
sc
ope
libs/iostreams/src/bzip2.cpp:144: error: ‘s’ was not declared in this scope
libs/iostreams/src/bzip2.cpp:144: error: expected type-specifier before
‘bz_stre
am’
libs/iostreams/src/bzip2.cpp:144: error: expected ‘>’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:144: error: expected ‘(’ before ‘bz_stream’
libs/iostreams/src/bzip2.cpp:144: error: expected primary-expression before
‘>’
token
libs/iostreams/src/bzip2.cpp:144: error: expected ‘)’ before ‘;’ token
libs/iostreams/src/bzip2.cpp:161: error: ‘BZ2_bzCompressInit’ was not
declared
i
n this scope
libs/iostreams/src/bzip2.cpp:164: error: ‘BZ2_bzDecompressInit’ was not
declared
in this scope
...failed updating 1 target...
real 0m2.806s
user 0m4.915s
sys 0m0.531s
[ERROR] Boost libary build failed (missing
/home/aamomin/ProteomicProcessing/TPP
download/TPP4.8.0/TPP-4.8.0/trans_proteomic_pipeline/src/../build/RedHatEnterpri
seServer-x86_64/boost/lib/libboost_iostreams.a), please report the results
of
ma
nually running the following commands:
cd
/home/aamomin/ProteomicProcessing/TPPdownload/TPP4.8.0/TPP-4.8.0/trans_proteo
mic_pipeline/src/../extern/boost_1_54_0; time
/home/aamomin/ProteomicProcessing/
TPPdownload/TPP4.8.0/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/boost_1_54
_0/tools/build/v2/engine/bin.linuxx86_64/bjam -q -d0
--stagedir=/home/aamomin/Pr
oteomicProcessing/TPPdownload/TPP4.8.0/TPP-4.8.0/trans_proteomic_pipeline/src/..
/build/RedHatEnterpriseServer-x86_64/boost
--build-dir=/home/aamomin/ProteomicPr
ocessing/TPPdownload/TPP4.8.0/TPP-4.8.0/trans_proteomic_pipeline/src/../build/Re
dHatEnterpriseServer-x86_64/boost/obj --layout=system --build-type=minimal
-j3
v
ariant=release link=static runtime-link=shared --with-filesystem
--with-date_tim
e --with-iostreams --with-program_options --with-regex --with-serialization
--wi
th-thread stage
make: *** [boost-build-libs] Error 255
On Wednesday, October 16, 2013 at 4:22:51 PM UTC-5,
[email protected] wrote:
>
> I've identified one problem with compiling with recent versions of gcc.
> It has to do with a new macro TIME_UTC conflicting with a enum in boost.
> You can read about it here (with a workaround):
>
> https://svn.boost.org/trac/boost/ticket/6940
> https://bbs.archlinux.org/viewtopic.php?pid=1126374
>
> I'm working on fixing it on TPP's trunk now.
>
> -Joe
>
>
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