I just had this issue yesterday, building on Elementary OS. It seems the 
space in the linux name (ARCH = "Elementary OS_x86_64" caused this problem. 
(I assume you've used the proper Makefile.config.incl, like the one further 
up this thread).
It seems possible for Suse Linux-x86_64 has a similiar issue.
Try starting over from the top (i.e. reunpack TPP-4.6.3.tgz and recopy 
Makefile.config.incl to the src dir).
Then run:
Make ARCH=x86_64

Did it for me.

Den fredagen den 9:e juli 2010 kl. 21:09:47 UTC+2 skrev bmcnally:
>
> Hello list, 
>
> I'm attempting to build TPP 4.3-1 on RHEL 5.4, gcc 4.1.2. I think I 
> have all of the required libraries specified here: 
>
>  install-prerequisites-centos-5_2.sh 
>
> Here's what happens when I try and `make all`: 
>
> mkdir -p /tmp/trans_proteomic_pipeline/src/../build/linux 
> building boost libraries... 
> warning: No toolsets are configured. 
> warning: Configuring default toolset "gcc". 
> warning: If the default is wrong, your build may not work correctly. 
> warning: Use the "toolset=xxxxx" option to override our guess. 
> warning: For more configuration options, please consult 
> warning: 
> http://boost.org/boost-build2/doc/html/bbv2/advanced/configuration.html 
> warning: Building Boost.Regex with the optional Unicode/ICU support 
> disabled. 
> note: Please refer to the Boost.Regex documentation for more 
> information 
> note: this is a strictly optional feature. 
> ...failed updating 1 target... 
>
> real        0m2.283s 
> user        0m2.375s 
> sys        0m0.240s 
> [ERROR] Boost libary build failed (missing /tmp/ 
> trans_proteomic_pipeline/src/../build/linux/boost/lib/ 
> libboost_filesystem.a), please report the results of manually running 
> the following commands: 
> cd /tmp/trans_proteomic_pipeline/src/../extern/boost_1_39_0/; time / 
> tmp/trans_proteomic_pipeline/src/../extern/boost_1_39_0/tools/jam/src/ 
> bin.linuxx86_64/bjam -q -d0 --stagedir=/tmp/trans_proteomic_pipeline/ 
> src/../build/linux/boost --layout=system --build-type=minimal -j3 
> variant=release link=static runtime-link=shared --with-filesystem -- 
> with-date_time --with-iostreams --with-program_options --with-regex -- 
> with-serialization --with-thread stage 
> make: *** [boost-build-libs] Error 255 
>
> Manually running the recommend command above results in the same 
> output: 
>
> cd /tmp/trans_proteomic_pipeline/src/../extern/boost_1_39_0/; time / 
> tmp/trans_proteomic_pipeline/src/../extern/boost_1_39_0/tools/jam/src/ 
> bin.linuxx86_64/bjam -q -d0 --stagedir=/tmp/trans_proteomic_pipeline/ 
> src/../build/linux/boost --layout=system --build-type=minimal -j3 
> variant=release link=static runtime-link=shared --with-filesystem -- 
> with-date_time --with-iostreams --with-program_options --with-regex -- 
> with-serialization --with-thread stage 
> warning: No toolsets are configured. 
> warning: Configuring default toolset "gcc". 
> warning: If the default is wrong, your build may not work correctly. 
> warning: Use the "toolset=xxxxx" option to override our guess. 
> warning: For more configuration options, please consult 
> warning: 
> http://boost.org/boost-build2/doc/html/bbv2/advanced/configuration.html 
> warning: Building Boost.Regex with the optional Unicode/ICU support 
> disabled. 
> note: Please refer to the Boost.Regex documentation for more 
> information 
> note: this is a strictly optional feature. 
> ...failed updating 1 target... 
>
> real        0m2.339s 
> user        0m2.370s 
> sys        0m0.241s 
>
> Any thoughts? 
>
> Thanks.

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