Hi David, I suspect all the iProphet files were fine as I opened them up prior to initially submitting them to ProteinProphet. I'll double check they were all fine, but I have combined more PeptideProphet files into fewer iProphet files overnight and they are now running nicely in ProteinProphet.
As a possible answer to your suggestion the OS is falling over the length of the command. When I added PeptideProphet files for iProphet treatment, I found that 45 files was okay, but I hit the wall at around 50 files. All this is via the Petunia interface. Thanks for your input, Peter On Thursday, September 10, 2015 at 3:41:35 PM UTC+10, [email protected] wrote: > > Hi, > > > I'm trying to generate a prot.xml file from 120 interact.ipro.pep.xml > files. There seems to be some numerical limit on ProteinProphet as when I > try to add all the ipro files the system immediately returns an error 256 > code. If I choose a smaller number, say 10 ipro files, it goes to > completion. Is there some max number of files that can be combined with > ProteinProphet? Is there some way around this? It's an absolute requirement > for me to make a prot.xml file from this data. > > > I'm using TPP v 4.8.0 on aWin7 system, 64-bit, 64 GB RAM. > > > If this is a known problem, I guess I could just pool more pep.xml files > into each ipro file to reduce my overall number of files input into > ProteinProphet. I've got some very large interact.ipro.pep.xml that are > taking time to process into the prot.xml but that's to be expected. > > > Thanks, > > > Peter > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
