Hi! I would like to resolve this error generated using TPP 4.8 when viewing protXml results after ProteinProphet. Link to the protXML results produces a internal server error (500) in the browser. This does not happen when viewing legacy view results on localhost, tested google chrome and IE. i've checked permissions, but perhaps i missed something? Many thanks in advance! Below are my software versions, and the Apache error/access logs toward the bottom. Many thanks in advance! Scott Scott
*Below is the relevant perl version(active state)* This is perl 5, version 22, subversion 1 (v5.22.1) built for MSWin32-x64-multi-thread (with 1 registered patch, see perl -V for more detail) My OS: Windows 7 64bit My TPP: 4.8.0.exe Apache 2.2 Upgraded cometms to v.2015025 (works, tested) And pwiz to the latest release (works, tested on Bruker, agilent and thermo) Using mzXMLs in seacrhes. Copyright 1987-2015, Larry Wall Binary build 2201 [299574] provided by ActiveState http://www.ActiveState.com Built Jan 4 2016 12:12:58 *Below is the relevant server access log:* 127.0.0.1 - - [11/Mar/2016:12:54:54 -0700] "GET /tpp-bin/ProtXMLViewer.pl?file=c:/Inetpub/wwwroot/ISB/data/perm/interact.prot.xml HTTP/1.1" 500 540 127.0.0.1 - - [11/Mar/2016:12:55:01 -0700] "GET /tpp-bin/tpp_gui.pl?Action=AJAXCheckStatusUpdates&rand=0.9998256567811105 HTTP/1.1" 200 4029 127.0.0.1 - - [11/Mar/2016:12:55:12 -0700] "GET /tpp-bin/tpp_gui.pl?Action=AJAXCheckStatusUpdates&rand=0.040754614766979336 HTTP/1.1" 200 4029 127.0.0.1 - - [11/Mar/2016:12:55:22 -0700] "GET /tpp-bin/tpp_gui.pl?Action=AJAXCheckStatusUpdates&rand=0.2696647564134357 HTTP/1.1" 200 4029 *And below is the relevant error log:* [Fri Mar 11 12:54:54 2016] [error] [client 127.0.0.1] Premature end of script headers: ProtXMLViewer.pl, referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:54:54 2016] [error] [client 127.0.0.1] Bareword "endform" not allowed while "strict subs" in use at C:\\Inetpub\\tpp-bin\\ProtXMLViewer.pl line 286., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:54:54 2016] [error] [client 127.0.0.1] Bareword "endform" not allowed while "strict subs" in use at C:\\Inetpub\\tpp-bin\\ProtXMLViewer.pl line 286., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:54:54 2016] [error] [client 127.0.0.1] Execution of C:\\Inetpub\\tpp-bin\\ProtXMLViewer.pl aborted due to compilation errors., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:55:01 2016] [error] [client 127.0.0.1] [Fri Mar 11 12:55:01 2016] tpp_gui.pl: CGI::Pretty is DEPRECATED and will be removed in a future release. Please see https://github.com/leejo/CGI.pm/issues/162 for more information at C:/Perl/lib/CGI/Pretty.pm line 19., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:55:12 2016] [error] [client 127.0.0.1] [Fri Mar 11 12:55:12 2016] tpp_gui.pl: CGI::Pretty is DEPRECATED and will be removed in a future release. Please see https://github.com/leejo/CGI.pm/issues/162 for more information at C:/Perl/lib/CGI/Pretty.pm line 19., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:55:22 2016] [error] [client 127.0.0.1] [Fri Mar 11 12:55:22 2016] tpp_gui.pl: CGI::Pretty is DEPRECATED and will be removed in a future release. Please see https://github.com/leejo/CGI.pm/issues/162 for more information at C:/Perl/lib/CGI/Pretty.pm line 19., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:55:33 2016] [error] [client 127.0.0.1] [Fri Mar 11 12:55:32 2016] tpp_gui.pl: CGI::Pretty is DEPRECATED and will be removed in a future release. Please see https://github.com/leejo/CGI.pm/issues/162 for more information at C:/Perl/lib/CGI/Pretty.pm line 19., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:55:43 2016] [error] [client 127.0.0.1] [Fri Mar 11 12:55:43 2016] tpp_gui.pl: CGI::Pretty is DEPRECATED and will be removed in a future release. Please see https://github.com/leejo/CGI.pm/issues/162 for more information at C:/Perl/lib/CGI/Pretty.pm line 19., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:55:53 2016] [error] [client 127.0.0.1] [Fri Mar 11 12:55:53 2016] tpp_gui.pl: CGI::Pretty is DEPRECATED and will be removed in a future release. Please see https://github.com/leejo/CGI.pm/issues/162 for more information at C:/Perl/lib/CGI/Pretty.pm line 19., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:56:04 2016] [error] [client 127.0.0.1] [Fri Mar 11 12:56:03 2016] tpp_gui.pl: CGI::Pretty is DEPRECATED and will be removed in a future release. Please see https://github.com/leejo/CGI.pm/issues/162 for more information at C:/Perl/lib/CGI/Pretty.pm line 19., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:56:14 2016] [error] [client 127.0.0.1] [Fri Mar 11 12:56:14 2016] tpp_gui.pl: CGI::Pretty is DEPRECATED and will be removed in a future release. Please see https://github.com/leejo/CGI.pm/issues/162 for more information at C:/Perl/lib/CGI/Pretty.pm line 19., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:56:24 2016] [error] [client 127.0.0.1] [Fri Mar 11 12:56:24 2016] tpp_gui.pl: CGI::Pretty is DEPRECATED and will be removed in a future release. Please see https://github.com/leejo/CGI.pm/issues/162 for more information at C:/Perl/lib/CGI/Pretty.pm line 19., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:56:35 2016] [error] [client 127.0.0.1] [Fri Mar 11 12:56:34 2016] tpp_gui.pl: CGI::Pretty is DEPRECATED and will be removed in a future release. Please see https://github.com/leejo/CGI.pm/issues/162 for more information at C:/Perl/lib/CGI/Pretty.pm line 19., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 [Fri Mar 11 12:56:45 2016] [error] [client 127.0.0.1] [Fri Mar 11 12:56:45 2016] tpp_gui.pl: CGI::Pretty is DEPRECATED and will be removed in a future release. Please see https://github.com/leejo/CGI.pm/issues/162 for more information at C:/Perl/lib/CGI/Pretty.pm line 19., referer: http://localhost/tpp-bin/tpp_gui.pl?Action=display&page=jobs&show_job=ZXEOQKV60_20160311-122718 -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
