It would be helpful if you post (or send me) the search parameters which is
the contents of the comet.params file.

On Mon, Mar 21, 2016 at 2:11 PM, <[email protected]> wrote:

> Hi everyone,
>
> I started a Comet search in TPP three days ago and it is still going three
> days later. I must have messed up something without knowing because TPP did
> not generate any error message. Did anyone else have similar experience?
> Please see my system and TPP info below.
>
> HP Z600 Workstation
> Windows 7 Professional
> Processor: Intel(R) Xeon(R) CPU E5640 @ 2.67GHz 2.66 GHz
> Installed memory (RAM): 24.0 GB
> System type: 64-bit Operating System
>
> TPP v4.8.0 PHILAE, Build 201411201551-6764 (mingw-i686)
>
> Comet search
>
> mzXML input file: mydata.mzXML (110 MB)
>                   generated using command line msconvert
>                   C:/Inetpub/tpp-bin/msconvert mydata.raw --mzXML --filter
> "mslevel 2" --filter "threshold count 100 most-intense"
>
> Comet Parameters file: comet.params (default, came with TPP installation)
> Sequence database: human_uniprot_sprot.fasta
>
> Any advice/pointer is greatly appreciated.
>
> Thanks,
>
> Bob Xiong
>
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