Hi, everyone. I want to run PeptideProphet using MS-GF+ results.
But it's not works well. In order to run PeptideProphet, we converted *.mzid to pepXML using idconvert (tpp 4.8 , ubuntu 14.04) Each psm have five types of scores: -raw -denovo -SepcEValue -IsotopeError *Then we executed the PeptideProphet with coverted file (cmd: xinteract -dXXX_ *.xml) and received such errors as follows:* Would you please give me some advises for solving this problem? Thanks a lot. ---- running: "/usr/local/tpp/bin/PeptideProphetParser 'interact.pep.xml' DECOY=XXX_" Using Decoy Label "XXX_". (MS-GF+) WARNING!! The discriminant function for MSGFPL is not yet complete. It is presented here to help facilitate trial and discussion. Reliance on this code for publishable scientific results is not recommended. WARNING: MSGFPL only support semi-parametric PeptideProphet modelling, which relies on a DECOY search. WARNING: MSGFPL only support semi-parametric PeptideProphet modelling, which relies on a DECOY search. WARNING: MSGFPL only support semi-parametric PeptideProphet modelling, which relies on a DECOY search. WARNING: MSGFPL only support semi-parametric PeptideProphet modelling, which relies on a DECOY search. WARNING: MSGFPL only support semi-parametric PeptideProphet modelling, which relies on a DECOY search. WARNING: MSGFPL only support semi-parametric PeptideProphet modelling, which relies on a DECOY search. WARNING: MSGFPL only support semi-parametric PeptideProphet modelling, which relies on a DECOY search. init with MS-GF+ trypsin Segmentation fault (core dumped) -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
