I've done several searches using the nextprot_all peff database from ftp://ftp.nextprot.org/pub/current_release/peff/
At the iProphet step I see the message that the FPKM model is being activated: FPKM values are available, to disable rerun with option NOFPKM ... This is probably due to the overloading of the ID line in the PEFF format to include mods & sNPs triggering whatever parse rules are used to find FPKMs. It's not a big deal to include the NOFPKM flag for now, but it may be useful in the future to refine the automatic parsing of FPKM values. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
