Hello Ali, For more information on SpectraST please see the following: http://tools.proteomecenter.org/wiki/index.php?title=Software:SpectraST
A quick search for retention time on that page suggest retention times are used for normalization using landmark peptides (e.g. iRT). So I believe the short answer to your question is no. That said, the RT model in PeptideProphet can use retention times to help promote peptide IDs that elute near their expected RT and demote those elute not near expectation. -David On Sun, Sep 4, 2016 at 6:30 PM, Ali <[email protected]> wrote: > Hi > > Does any body know whether SpectraST uses retention time in analyzing a > shotgun data (a spectrast search) or not? Can I get some details about it? > > Thank you very much, > > *Ali* > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
