Many thanks for your response David! I've read the page you mentioned, I wanted to make sure.
Sincerely, Ali On Monday, September 5, 2016 at 12:24:47 PM UTC-4, David Shteynberg wrote: > > Hello Ali, > > For more information on SpectraST please see the following: > http://tools.proteomecenter.org/wiki/index.php?title=Software:SpectraST > > > A quick search for retention time on that page suggest retention times are > used for normalization using landmark peptides (e.g. iRT). So I believe > the short answer to your question is no. > > That said, the RT model in PeptideProphet can use retention times to help > promote peptide IDs that elute near their expected RT and demote those > elute not near expectation. > > -David > > > On Sun, Sep 4, 2016 at 6:30 PM, Ali <[email protected] <javascript:>> > wrote: > >> Hi >> >> Does any body know whether SpectraST uses retention time in analyzing a >> shotgun data (a spectrast search) or not? Can I get some details about it? >> >> Thank you very much, >> >> *Ali* >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
