Hi, I'm having a problem compiling TPP 4.8.0 on CentOS 6.8 running on Google Cloud platform, it's the CentOS 6 distro VM Google provides. I keep getting an error during the boost portion when I do make all. A copy of the error capture is below.
BTW I read through a previous thread for a similar missing libboost_thread.a boost compile error: https://groups.google.com/forum/#!searchin/spctools-discuss/libboost_thread.a|sort:relevance/spctools-discuss/PKpva-j8YbU/eHbiEZqXj64J The fix advised (https://svn.boost.org/trac/boost/changeset/84950) seems to be already in the TPP 4.8.0 file TPP-4.8.0/trans_proteomic_pipeline/extern/boost_1_54_0/boost/cstdint.hpp. One difference I notice in my error is g++ is getting killed: g++: Internal error: Killed (program cc1plus) g++ is up to date with the CentOS repository: # g++ --version g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Any ideas? Thanks, Joe Log: ...done building boost bjam building boost libraries... warning: No toolsets are configured. warning: Configuring default toolset "gcc". warning: If the default is wrong, your build may not work correctly. warning: Use the "toolset=xxxxx" option to override our guess. warning: For more configuration options, please consult warning: http://boost.org/boost-build2/doc/html/bbv2/advanced/configuration.html Performing configuration checks - zlib : yes - has_icu builds : yes Component configuration: - atomic : not building - chrono : not building - context : not building - coroutine : not building - date_time : building - exception : not building - filesystem : building - graph : not building - graph_parallel : not building - iostreams : building - locale : not building - log : not building - math : not building - mpi : not building - program_options : building - python : not building - random : not building - regex : building - serialization : building - signals : not building - system : not building - test : not building - thread : building - timer : not building - wave : not building g++: Internal error: Killed (program cc1plus) Please submit a full bug report. See <http://bugzilla.redhat.com/bugzilla> for instructions. ...failed updating 1 target... real 3m5.068s user 2m36.514s sys 0m13.767s ...done building boost libraries building boost libraries... warning: No toolsets are configured. warning: Configuring default toolset "gcc". warning: If the default is wrong, your build may not work correctly. warning: Use the "toolset=xxxxx" option to override our guess. warning: For more configuration options, please consult warning: http://boost.org/boost-build2/doc/html/bbv2/advanced/configuration.html Performing configuration checks - zlib : yes (cached) - has_icu builds : yes (cached) Component configuration: - atomic : not building - chrono : not building - context : not building - coroutine : not building - date_time : building - exception : not building - filesystem : building - graph : not building - graph_parallel : not building - iostreams : building - locale : not building - log : not building - math : not building - mpi : not building - program_options : building - python : not building - random : not building - regex : building - serialization : building - signals : not building - system : not building - test : not building - thread : building - timer : not building - wave : not building g++: Internal error: Killed (program cc1plus) Please submit a full bug report. See <http://bugzilla.redhat.com/bugzilla> for instructions. ...failed updating 1 target... real 1m39.969s user 0m34.877s sys 0m11.522s [ERROR] Boost libary build failed (missing /root/TPP-4.8.0/trans_proteomic_pipeline/src/../build/CentOS-x86_64/boost/lib/libboost_thread.a), please report the results of manually running the following commands: cd /root/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/boost_1_54_0; time /root/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/boost_1_54_0/tools/build/v2/engine/bin.linuxx86_64/bjam -q -d0 --stagedir=/root/TPP-4.8.0/trans_proteomic_pipeline/src/../build/CentOS-x86_64/boost --build-dir=/root/TPP-4.8.0/trans_proteomic_pipeline/src/../build/CentOS-x86_64/boost/obj --layout=system --build-type=minimal -j3 variant=release link=static runtime-link=shared --with-filesystem --with-date_time --with-iostreams --with-program_options --with-regex --with-serialization --with-thread stage make: *** [boost-build-libs] Error 255 So I followed their advice to rerun that command above, the same error is repeated: # cd /root/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/boost_1_54_0; time /root/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/boost_1_54_0/tools/build/v2/engine/bin.linuxx86_64/bjam -q -d0 --stagedir=/root/TPP-4.8.0/trans_proteomic_pipeline/src/../build/CentOS-x86_64/boost --build-dir=/root/TPP-4.8.0/trans_proteomic_pipeline/src/../build/CentOS-x86_64/boost/obj --layout=system --build-type=minimal -j3 variant=release link=static runtime-link=shared --with-filesystem --with-date_time --with-iostreams --with-program_options --with-regex --with-serialization --with-thread stage warning: No toolsets are configured. warning: Configuring default toolset "gcc". warning: If the default is wrong, your build may not work correctly. warning: Use the "toolset=xxxxx" option to override our guess. warning: For more configuration options, please consult warning: http://boost.org/boost-build2/doc/html/bbv2/advanced/configuration.html Performing configuration checks - zlib : yes - has_icu builds : yes Component configuration: - atomic : not building - chrono : not building - context : not building - coroutine : not building - date_time : building - exception : not building - filesystem : building - graph : not building - graph_parallel : not building - iostreams : building - locale : not building - log : not building - math : not building - mpi : not building - program_options : building - python : not building - random : not building - regex : building - serialization : building - signals : not building - system : not building - test : not building - thread : building - timer : not building - wave : not building g++: Internal error: Killed (program cc1plus) Please submit a full bug report. See <http://bugzilla.redhat.com/bugzilla> for instructions. ...failed updating 1 target... real 1m11.286s user 0m44.969s sys 0m6.557s Additional Info: System packages are up to date. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
