Hi Fernanda,
This board is for the Trans-Proteomic Pipeline, not ProteomeDiscoverer. I 
suggest contacting Thermo technical support for a solution to your issue.
https://www.thermofisher.com/us/en/home/technical-resources/contact-us.IQLAAEGABSFAKJMAUH.html

There may be some helpful info in the user guide as well:
https://www.thermofisher.com/content/dam/tfs/ATG/CMD/cmd-documents/oper/oper/ms/lc-ms/soft/Man-XCALI-97751-Proteome-Discoverer-21-User-ManXCALI97751-A-EN.pdf

All the best

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