Hi Fred, 

I'm dealing with the same error even on previous analyses (that worked as 
they should) so I was wondering if you found an answer to the problem (and 
if you remember of it). 

Thanks in advance

Le jeudi 5 septembre 2013 09:25:16 UTC+2, DELOLME Frederic a écrit :
>
> Hi everyone,
>
> Here is the message I encoutered when running PeptideProphet, 
> ProteinProphet and Libra :
>
> c:\Inetpub\tpp-bin\xinteract (TPP v4.6 OCCUPY RC7 rev 3, Build 
> 201307221519 (MinGW))
>
>  
>
> running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" 
> "4-Plex_QExact.pep.xml" -L"5""
>
>  file 1: 4-Plex_QExact.pep.xml
>
> Unknown .gz file. Only .mzML.gz and .mzXML.gz allowed. No file loaded.
>
> WARNING: cannot open data file 
> c:/Inetpub/wwwroot/ISB/data/Mourad_Bekhouche/4-Plex_Qexact/4-Plex_QExact.gz 
> in msms_run_summary tag ...Unknown .gz file. Only .mzML.gz and .mzXML.gz 
> allowed. No file loaded.
>
> WARNING: cannot CORRECT data file 
> c:/Inetpub/wwwroot/ISB/data/Mourad_Bekhouche/4-Plex_Qexact/4-Plex_QExact.gz 
> in msms_run_summary tag ...
>  processed altogether 20901 results
>
>
> It looks like the program is searching a .gz file wich doesn't exist in my 
> folder whereas .mzXML.gz is present. Whatever I do in MSConvert, It's still 
> looking the same file.
>
>
> Any idea of reason why ? I would really appreciate to have an advice or 
> better, a solution to fix it.
>
> Thanks in advance
>
> Fred
>

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