Hi,
It takes me more than 20 hours to get this done. I do not see other posts 
regarding the some of the problems I met. So it may be unique to Ubuntu 
16.04 or to my server environment. But in case someone else encounters 
those problems, also, for seeking advice from experienced users, I post it 
here. 

I post a detailed guidance including my debugging route here 
<https://github.com/RodenLuo/Public_Materials/blob/master/Install_TPP_v5_on_Ubuntu_16.04.md>
 on 
GitHub for a better view. Below is a short description.

1. Follow guidance in this thread 
<https://groups.google.com/forum/#!topic/spctools-discuss/bBQLb0PLulg>.
2. Use the newest boost library to replace the old one inside TPP source 
file and change the corresponding code in "Makefile".
3. Manually install libpng-1.5.19.tar.gz in TPP source file and change the 
corresponding code in "configure".
4. Install required Perl libraries.
5. Configure httpd-tpp.conf in an Apache2.4 manner.
6. Change the ownership of all installed file to www-data:www-data.

I am a novice to Linux with some experience on Perl language and shell 
command and totally new to proteomics and TPP. This is the first time I 
dive into the Makefile and configure file but still do not quite understand 
what's going on there, the first time I download boost library and apache 
stuff. Thanks to the online resources, somehow, I get this done finally. 
But, there may be some steps being processed in an inexperienced manner. So 
hope someone interested can have a look and give comments. (Also, there is 
an error that has not been solved, but it seems not affecting the function 
at all. I briefly mentioned at the end of the GitHub page. I will mention 
in another thread soon, your suggestion will be much appreciated.)

Thanks,
Roden

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