It appears you are using an old version of the TPP.  Have you tried
processing your data with the latest version?

-David

On Tue, Dec 6, 2016 at 8:25 PM, Bindiya Sachdev <[email protected]>
wrote:

> Hi,
> I am getting Command fail error at Xinteract onwards in TPP. Please help
> in resolving.
>
> Thanks
> Bindiya
>
>
>
> Output Files
>
>    - *c:/Inetpub/wwwroot/ISB/data/parameters/interact.ipro.pep.xml* [
>    PepXML
>    
> <http://localhost/tpp-bin/PepXMLViewer.cgi?xmlFileName=c:/Inetpub/wwwroot/ISB/data/parameters/interact.ipro.pep.xml>
>    ]
>
>
>   Command 1 [Tue Dec 6 22:15:53 2016]        [ Show / Hide ]
> *EXECUTING: cd c:/Inetpub/wwwroot/ISB/data/parameters&
> c:\Inetpub\tpp-bin\InterProphetParser
> c:/Inetpub/wwwroot/ISB/data/parameters/interact.pep.xml
> interact.ipro.pep.xml *
>
> Running NSS NRS NSE NSI NSM NSP FPKM Model EM:
> Computing NSS values ...
> . done
> Computing NRS values ...
> .........10.........20.........30.........40.........50.........60.........70...
>  done
> Computing NSE values ...
> .........10.........20.........30.........40.........50.........60.........70...
>  done
> Computing NSI values ...
> .........10.........20.........30.........40.........50.........60.........70...
>  done
> Computing NSM values ...
> .........10.........20.........30.........40.........50.........60.........70...
>  done
> Computing NSP values ...
> Creating 1 threads
> Wait for threads to finish ...
> 0--------------------------------------------------50------------------------------------------------100%
>
> *Command FAILED*
> RETURN CODE:65280
>
>  All commands finished at * Tue Dec 6 22:15:53 2016*
>
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