I cannot recall any other report like this and have never experienced anything like this myself that I can recall. Can you describe in more detail exactly what the origin and version of this executable is?
Is it true that other executables like Comet or X!Tandem do not suffer from this huge slowdown using the same files/filesystems? What distro/version of Linux are you using? Regards, Eric *From:* [email protected] [mailto: [email protected]] *On Behalf Of *Jianqiao Shen *Sent:* Thursday, January 12, 2017 1:01 PM *To:* spctools-discuss *Subject:* [spctools-discuss] Re: Spectrast slow processing with .msp file under Linux Hi Eric, Thank you for your reply. I/O bound may be the problem. However, when I do my search with Spectrast, the speed is also quite slow. Nearly 20 times slower than my laptop. The CPU usage is only 3% as well. So, I am confused whether it is because the linux standalone version of Spectrast. 在 2017年1月11日星期三 UTC-5下午2:43:42，Jianqiao Shen写道： Hi, I am using Spectrast Creat mode to convert my .msp file into .splib file. I only build the stand-alone Spectrast on our cluster. The problem is that Spectrast runs quite slow on our cluster and the cpu usage is only 3%. I also try the same process on my laptop Windows, it is faster and finishes in only 200 seconds. The command I use is 'spectrast -cNtest test.msp'. Can anyone tell me how to solve it and is there any parameters I can set so that Spectrast can be used with multi processors? Thank you! Jianqiao Shen -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
