I would like to convert the .pep.xml files I am obtaining from Comet in the TPP into mzid files. However the converter module in the TPP only converts .prot.xml files to mzid files. I want to use .pep.xml files in order to keep some peptide level information, which is not kept in the .prot.xml files generated by TPP.
I have also tried using idConvert straight from ProteoWizard, but the script crashes on the file with the following error: [UnimodData::ctor] error parsing term "UNIMOD:454": [UnimodData::getBrickFormula] unknown element or brick "HexN" Has anybody encountered this problem before? Could someone help me find a way to convert those .pep.xml files into .mzid files? Thank you! -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
