Hello, Glad that you were able to follow these instructions and (almost) get a full-working TPP. It turns out that the site.mk values are not correct in that page; the correct names (and sample values) should be:
INSTALL_DIR = /local/tpp TPP_BASEURL = tpp TPP_DATADIR = /local/data I think this should make all of the links (and Petunia) work, including the links to the javascript resources that are keeping you from seeing the models page. Please try again when you get a chance and let us know how it goes. We will also update the wiki. --Luis On Thu, Feb 2, 2017 at 12:08 PM, Cedar McKay <[email protected]> wrote: > Hello, I attempted to install TPP on Ubuntu 16.04 using this guide: > > > http://tools.proteomecenter.org/wiki/index.php?title=TPP_ > 5.0.0:_Installing_on_Ubuntu_16.04 > > > It was a partial success. > > > > I had to do the following differently: > > > had to install FindBin::libs with cpan > > > At the site.mk step, I couldn't use cat and cut and past from the > directions, because the line endings ended being screwed up. I used a text > editor to create the file, and all was well. > > > In several places in petunia various links and images were broken. I > solved most of these like this: > In tpp_gui_config.pl had to insert: > 'tpp_html_url' => '/tpp/html/', > 'tpp_cgi_url' => '/tpp/cgi-bin/', > 'tpp_gui_url' => '/tpp/cgi-bin/tpp_gui.pl', > 'tpp_data_url' => '/tpp/data/', > > > I solved a few more of these by putting symbolic links inside cgi-bin to > data -> ../data/, html -> ../html/, tpp -> ../../tpp/ and allowing symbolic > links in httpd-tpp-2.conf. > > Now things are mostly working, but I still have a few problems. > > For example, the link to each MODELS.html from the pepXML viewer is > broken, but even if I navigate manually to the MODELS.html page, I see a > bunch a blank graphs. > > I guess this is just a heads up that pretty carefully following that > tutorial left me with a non working install starting with a fresh ubuntu > 16.04 install. > > Thanks! > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
