Hello, I attempted to install TPP on Ubuntu 16.04 using this guide:

http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.0.0:_Installing_on_Ubuntu_16.04


It was a partial success. 



I had to do the following differently:


had to install FindBin::libs with cpan


At the site.mk step, I couldn't use cat and cut and past from the 
directions, because the line endings ended being screwed up. I used a text 
editor to create the file, and all was well.


In several places in petunia various links and images were broken. I solved 
most of these like this:
In tpp_gui_config.pl had to insert:
'tpp_html_url' => '/tpp/html/',
'tpp_cgi_url' => '/tpp/cgi-bin/',
'tpp_gui_url' => '/tpp/cgi-bin/tpp_gui.pl',
'tpp_data_url' => '/tpp/data/',


I solved a few more of these by putting symbolic links inside cgi-bin to 
data -> ../data/, html -> ../html/, tpp -> ../../tpp/ and allowing symbolic 
links in httpd-tpp-2.conf.

Now things are mostly working, but I still have a few problems.

For example, the link to each MODELS.html from the pepXML viewer is broken, 
but even if I navigate manually to the MODELS.html page, I see a bunch a 
blank graphs.

I guess this is just a heads up that pretty carefully following that 
tutorial left me with a non working install starting with a fresh ubuntu 
16.04 install.

Thanks!

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