Hello Francesca, It looks like this is a problem with Comet trying to produce .out files as output; we will contact the developers to troubleshoot this.
You may want, however, to produce pepXML output, which is the format used by TPP (assuming that's your desired workflow) -- please mind the following parameters in your file and change them accordingly: output_pepxmlfile = 0 output_outfiles = 1 Cheers, --Luis On Thu, Feb 2, 2017 at 1:24 PM, Francesca Barry <[email protected] > wrote: > Hello, > > I'm trying to run a Comet search in TPP against a human database. > Ultimately, I'm trying to run the decoy search, which didn't work. > > Since this didn't work, I went back and tried to re-run the forward search > that I did 3 weeks ago with the exact same .mzML file, the exact same > .params file, and the exact same fasta sequence as before (which all worked > previously). Now for some reason this forward/non-decoy search doesn't > even work and gives the same error as I'm getting when trying to do the > decoy search (see attached image, which is the error for decoy search, but > it's the same error either way). > > I have also attached the params file that I used 2 weeks ago (which I only > modified this time by setting the decoy search = 1). > > Any help would be appreciated because I don't understand how it no longer > works with the EXACT same files when it worked 3 weeks ago. > > Thank you! > > Francesca > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
