Hi David, I am using TPP v5.01 Post-Typhoon dev, Build 201706192108-7604 (Windows_NT-x86_64)
Are you using default parameters when running the tool? Best, Adam On Friday, October 27, 2017 at 10:11:34 AM UTC-5, David Shteynberg wrote: > > Hello Adam, > > I was able to generate a heatmap just running the tool on your files. I > am not sure why this would be broken for you. Which version are you using > at the moment? Perhaps you can try our latest release candidate. > > -David > > On Fri, Oct 27, 2017 at 7:51 AM, Adam R <[email protected] <javascript:>> > wrote: > >> Hi David, >> >> I have attached the prot.xml files to this post. Thank you for checking >> this out. >> >> Best, >> >> Adam >> >> >> >> On Tuesday, October 24, 2017 at 12:41:21 PM UTC-5, David Shteynberg wrote: >>> >>> Hi Adam, >>> >>> I verified on my system that I can generate a heatmap on some test >>> data. If you can transfer your protXML files to me I can try to >>> troubleshoot. >>> >>> -David >>> >>> On Mon, Oct 23, 2017 at 8:24 AM, Adam R <[email protected]> wrote: >>> >>>> Hi David, >>>> >>>> Besides the commands there was nothing else. I re-ran the analysis and >>>> have included screenshots of the entire page. >>>> >>>> Best, >>>> >>>> Adam >>>> >>>> On Wednesday, October 18, 2017 at 1:04:31 PM UTC-5, David Shteynberg >>>> wrote: >>>>> >>>>> Hello Adam, >>>>> >>>>> Was there any other output generated on the webpage from the rest of >>>>> the commands? >>>>> >>>>> Thanks, >>>>> -David >>>>> >>>>> On Wed, Oct 18, 2017 at 10:20 AM, Adam R <[email protected]> wrote: >>>>> >>>>>> I am running into an issue with the generation of the file in order >>>>>> to compare four prot.xml files...the commands are run and say >>>>>> "successful" >>>>>> but no files are generated screenshot attached). Are there any >>>>>> recommended >>>>>> settings to use for a first pass? I am using TPP v5.0.1-7604 >>>>>> >>>>>> Best, >>>>>> >>>>>> Adam >>>>>> >>>>>> >>>>>> On Monday, October 16, 2017 at 12:47:56 PM UTC-5, Alexis Varin wrote: >>>>>>> >>>>>>> I used compare proteins tool to compare my prot.xml files. The >>>>>>> command was successfull and I obtained the compare.xls.d3.html file >>>>>>> containing the heatmap. Problem : the html is 80 Mb and nothing seems >>>>>>> to be >>>>>>> sturdy enough to open it, all browsers, 32 bits or 64 bits (and I >>>>>>> really >>>>>>> mean all) crash before (the PC has 32 Gb RAM but the browsers crash way >>>>>>> before reaching that limit). >>>>>>> >>>>>>> What can I use to visualize the data ? I can see the html code fine >>>>>>> with EmEditor for example (1.6 million lines) but seeing the >>>>>>> heatmap proves difficult. >>>>>>> >>>>>>> Thanks for the help >>>>>>> >>>>>> -- >>>>>> You received this message because you are subscribed to the Google >>>>>> Groups "spctools-discuss" group. >>>>>> To unsubscribe from this group and stop receiving emails from it, >>>>>> send an email to [email protected]. >>>>>> To post to this group, send email to [email protected]. >>>>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>>>> For more options, visit https://groups.google.com/d/optout. >>>>>> >>>>> >>>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to [email protected]. >>>> To post to this group, send email to [email protected]. >>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>> For more options, visit https://groups.google.com/d/optout. >>>> >>> >>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
