Hello Trayambak,
The input filename has the wrong extension.  If you see the full name on
the last screenshot, it ends in* .pep.xml.pepXML*.   It has to be renamed
so that it ends in *.pep.xml* for the interface to recognize it.
Hope this helps,
--Luis


On Thu, Nov 2, 2017 at 3:00 PM, Trayambak Basak <[email protected]>
wrote:

>
> HI Team,
>
> I tried running  peptide PROPHET from a pepXML file (search output from
> Myrimatch). I  need the peptide-PROPHET output to build a library in
> SKYLINE.  But in the TPP online peptide prophet module it is not accepting
> this format (attached pdf).
>
>
>
> It would be great if you can help me out in this matter.
>
>
>
> Thanks,
>
> Trayambak.
>
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