I'm using the newest version of TPP, but encountered the same error when using PeptideProphet. The file name I used looks like I08-F4-SAX1.pep.xml Any solution?
Thanks. Elkan 在 2017年6月20日星期二 UTC+8上午1:28:34，David Shteynberg写道： > > Hello Ada, > > One immediate problem I notice is that your files contain parenthesis > character. Please name your files using only alphanumeric and underscore > character, please no special characters or whitespace. Also, you might > consider using comet search engine, support for which is more streamlined > in the TPP. > > Cheers, > -David > > On Mon, Jun 19, 2017 at 9:46 AM, Ada A <ada.an...@gmail.com <javascript:>> > wrote: > >> Hello, >> >> I was trying to run peptide analysis with PeptideProphet but it keeps >> showig me error... >> I was using dimethyl labeling technique and peptides were identified >> using Mascot. I exported all data from Mascot, uploaded here and it fails >> to do anything. I was wondering whether anyone could advice me what should >> I do with it? I would be grateful for some help. >> >> Here is what it shows me: >> >> C:/TPP/bin/xinteract (TPP v5.0.0 Typhoon, Build 201610111222-7423 >> (Windows_NT-x86_64)) >> PPM mode in Accurate Mass Model ... >> C:\TPP\bin\mkdir.exe: cannot create directory `/tmp\a09964\': File exists >> >> command "C:\TPP\bin\mkdir.exe -p "/tmp/a09964/"" failed: Operation not >> permitted >> could not create temp dir /tmp/a09964/, working in data directory >> running: "C:/TPP/bin/InteractParser "interact.pep.xml" "H7(3).pep.xml" >> "h7(3).xml" -L"7"" file 1: H7(3).pep.xmlWARNING: empty raw_data in >> msms_run_summary tag ... trying mzML ... >> Failed to open input file 'c:/TPP/data/.mzML'.WARNING: cannot open data file >> c:/TPP/data/.mzML in msms_run_summary tag ...... trying .mzXML ... >> Failed to open input file 'c:/TPP/data/.mzXML'.WARNING: cannot CORRECT data >> file c:/TPP/data/.mzXML in msms_run_summary tag ...WARNING: empty raw_data >> in msms_run_summary tag ... trying mzML ... >> Failed to open input file 'c:/TPP/data/.mzML'.WARNING: cannot open data file >> c:/TPP/data/.mzML in msms_run_summary tag ...... trying .mzXML ... >> Failed to open input file 'c:/TPP/data/.mzXML'.WARNING: cannot CORRECT data >> file c:/TPP/data/.mzXML in msms_run_summary tag ... >> >> >> >> Kind Regards, >> >> Ada >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discu...@googlegroups.com <javascript:>. >> To post to this group, send email to spctools...@googlegroups.com >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
