Hello Ada, One immediate problem I notice is that your files contain parenthesis character. Please name your files using only alphanumeric and underscore character, please no special characters or whitespace. Also, you might consider using comet search engine, support for which is more streamlined in the TPP.
Cheers, -David On Mon, Jun 19, 2017 at 9:46 AM, Ada A <ada.antyp...@gmail.com> wrote: > Hello, > > I was trying to run peptide analysis with PeptideProphet but it keeps > showig me error... > I was using dimethyl labeling technique and peptides were identified using > Mascot. I exported all data from Mascot, uploaded here and it fails to do > anything. I was wondering whether anyone could advice me what should I do > with it? I would be grateful for some help. > > Here is what it shows me: > > C:/TPP/bin/xinteract (TPP v5.0.0 Typhoon, Build 201610111222-7423 > (Windows_NT-x86_64)) > PPM mode in Accurate Mass Model ... > C:\TPP\bin\mkdir.exe: cannot create directory `/tmp\a09964\': File exists > > command "C:\TPP\bin\mkdir.exe -p "/tmp/a09964/"" failed: Operation not > permitted > could not create temp dir /tmp/a09964/, working in data directory > running: "C:/TPP/bin/InteractParser "interact.pep.xml" "H7(3).pep.xml" > "h7(3).xml" -L"7"" file 1: H7(3).pep.xmlWARNING: empty raw_data in > msms_run_summary tag ... trying mzML ... > Failed to open input file 'c:/TPP/data/.mzML'.WARNING: cannot open data file > c:/TPP/data/.mzML in msms_run_summary tag ...... trying .mzXML ... > Failed to open input file 'c:/TPP/data/.mzXML'.WARNING: cannot CORRECT data > file c:/TPP/data/.mzXML in msms_run_summary tag ...WARNING: empty raw_data in > msms_run_summary tag ... trying mzML ... > Failed to open input file 'c:/TPP/data/.mzML'.WARNING: cannot open data file > c:/TPP/data/.mzML in msms_run_summary tag ...... trying .mzXML ... > Failed to open input file 'c:/TPP/data/.mzXML'.WARNING: cannot CORRECT data > file c:/TPP/data/.mzXML in msms_run_summary tag ... > > > > Kind Regards, > > Ada > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
