On Saturday, 13 January 2018 19:59:06 UTC+5:30, Vipul Batra wrote:
>
> I am getting this error : "*Command FAILED * RETURN CODE:65280" every 
> time I am using X!tandem. I have used the same database and mzml files with 
> comet and the commands were successfully run, however, there seems to be an 
> issue with X! TANDEM. I have even tried with different databases e.g. 
> bovine, human, bubalis but no go . Please guide. 
>
 
Iterations: .........10.........20......
WARNING: Mixture model quality test failed for charge (2+).
WARNING: Mixture model quality test failed for charge (3+).
WARNING: Mixture model quality test failed for charge (4+).
WARNING: Mixture model quality test failed for charge (5+).
model complete after 27 iterations
command completed in 2 sec 

running: "E:/TPP/bin/ProphetModels.pl -i 
/tmp/a06808/params/interact.pep.xml" Analyzing 
/tmp/a06808/params/interact.pep.xml ...
Parsing search results "e:/TPP/data/raw/SAMPLE1 (X! Tandem (k-score))"...
  => Found 0 hits. (0 decoys, 0 excluded)
  => Total so far: 0 hits. (0 decoys, 0 excluded)
command completed in 0 sec 
moving tempfile /tmp/a06808/params/interact.pep.xml to interact.pep.xml

running: "E:/TPP/cgi-bin/PepXMLViewer.cgi -I 
/tmp/a06808/params/interact.pep.xml.a06808" 
command "E:/TPP/cgi-bin/PepXMLViewer.cgi -I 
/tmp/a06808/params/interact.pep.xml.a06808" failed: Unknown error

command "E:/TPP/cgi-bin/PepXMLViewer.cgi -I 
/tmp/a06808/params/interact.pep.xml.a06808" exited with non-zero exit code: 
255
QUIT - the job is incomplete

 

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