While the TPP does support analysis of search result beyond those listed in
the TPP interface, Byonic is currently not supported in the TPP; mainly
because we don't use this search engine in our processing due to the cost
and availability of open source free solutions.  Given some pepXML output
and a decoy database search it should be possible to add this analysis
fairly easily to the TPP.  We can consider supporting this in a future
release.

-David



On Mon, Jan 15, 2018 at 9:49 AM, M McDermott <[email protected]>
wrote:

> I am just beginning to explore TPP. Is it possible to use other programs’
> results, in my case Byonic, with PeptideProphet? Even if I have a pepxml
> file type, it seems that I must select one of the 7 supported searches - is
> this correct?
>
>
> Thanks for your help.
>
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