Hi Stanislav, thank you for your post. You say that everything seems to work fine. Does that mean that you are able to log in at:
http://localhost:10401/tpp/cgi-bin/tpp_gui.pl ? The PepXMLViewer is designed to be invoked through the web interface and may not produce anything visibly interesting when invoked through the command line. Are you able to view results through the web interface? Regards, Eric *From:* [email protected] [mailto: [email protected]] *On Behalf Of *Stanislav Luban *Sent:* Sunday, February 04, 2018 2:08 AM *To:* spctools-discuss <[email protected]> *Subject:* [spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/ tpp_gui.pl was not found on this server. Hi, First I did make clean in the makefile directory then sudo rm -r on the tpp directory then reinstalled v5.1.0 starting with sudo tar -xvf TPP_5.1.0-src.tar But now that running TPP v5.1.0 there is another problem with cgi it seems. Everything seems to work fine, but after running with various parameters /local/tpp/bin/xinteract in all of the output ...pep-MODELS.html and ...prot-MODELS.html files all of the plot areas are empty. Tried running on the Tandem then Peptide Prophet output the standalone command /local/tpp/cgi-bin/PepXMLViewer.cgi -I OR20080_tandemPepProphet.pep.xml and it produces no results as far as I can tell. Noticed that as part of the installation instructions we did sudo a2enmod cgid This seemed to work fine. Had this problem with the previous installation of TPP v5.0.0 as well. Maybe I am missing something? Not really sure what else to try to hopefully make it work. Could you please help? Thanks greatly, s luban On Thursday, January 25, 2018 at 5:11:51 PM UTC+2, Stanislav Luban wrote: Hi, Getting an error when installing TPP v5.0.0 Typhoon on Ubuntu 16.04 following the instructions http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.0.0:_Installing_on_Ubuntu_16.04 The command line commands mostly seem to work. But when I load http://localhost:10401 it gives me the Apache2 Ubuntu Default Page and when I go to http://localhost:10401/tpp/cgi-bin/tpp_gui.pl It says Not Found The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. The same thing happens for the file I created /local/tpp/cgi-bin/mytextfile.txt >which perl gives /usr/bin/perl and the first line of my /local/tpp/cgi-bin/*.pl files (check_env.pl, tpp_gui.pl, ...) has #!/usr/bin/perl My /etc/apache2/apache2.conf has the line IncludeOptional /etc/apache2/conf-enabled/*.conf and I know that /etc/apache2/conf-enabled/httpd-tpp.conf is being read in because when I changed in it 'Listen 10401' to 'Listen 80' and back it switched to that one and back Both my /etc/apache2/apache2.conf and /etc/apache2/conf-enabled/httpd-tpp.conf have SetEnv WEBSERVER_TMP /tmp SetEnv WEBSERVER_ROOT /local/tpp Is this right? Not really sure what else to try to hopefully make it work. Could you please help? Thanks greatly, s luban -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
