Thank you very much David, That helped a lot otherwise petunia takes so long to load the params folder to choose the files.
Best Volkan. 1 Mart 2018 Perşembe 21:55:11 UTC-5 tarihinde David Shteynberg yazdı: > > The search result will be written to the directory containing the params > file. Copy the params file to the directory you want your results to go > for example create a directory structure as follows > > C:\TPP\data\MyExperimentName1 > > Put you raw data and mzML files here > > C:\TPP\data\MyExperimentName1\data > > Put your comet params here > > C:\TPP\data\MyExperimentName1\comet > > Put your tandem params here > > C:\TPP\data\MyExperimentName1\tandem > > > Cheers, > -David > > > On Thu, Mar 1, 2018 at 5:17 PM, Volkix <[email protected] <javascript:>> > wrote: > >> Thank you David, >> >> I have hundreds of raw files to be analysed but I analyze them >> sequentially. I don't load parallel searches. But I guess I can load >> Interactparser parallel since it doesn't stresses the cpu too much. Another >> question out of the title actually, can I command via petunia to deploy the >> .pep.xml files of Xtandem or comet search results to a specific folder and >> not to params folder? >> >> Best >> Volkan >> >> 1 Mart 2018 Perşembe 17:07:46 UTC-5 tarihinde David Shteynberg yazdı: >>> >>> Hi Volkan, >>> >>> InteractParser is not multithreaded. Many search engines and some tools >>> in the TPP are. The TPP is not very memory hungry, but this depends on the >>> size of your analysis files and how many file you analyze in one TPP run >>> together. >>> >>> Best, >>> -David >>> >>> >>> On Thu, Mar 1, 2018 at 2:02 PM, Volkix <[email protected]> wrote: >>> >>>> Hi all, >>>> >>>> Does anyone knows if interact parser support multi threading? I >>>> couldn't find any info about it. Beside that I have the feeling that TPP >>>> does not need too much memory but CPU power, so having lots of cores >>>> really >>>> helps to shorten the search times. Do you agree as well? >>>> >>>> Best >>>> Volkan >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to [email protected]. >>>> To post to this group, send email to [email protected]. >>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>> For more options, visit https://groups.google.com/d/optout. >>>> >>> >>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
