Hello, I recently discovered TPP and have been trying to analyze my recent data from Proteome Discoverer 2.2 with PeptideProphet and every time I try to analyze the .pep.xml file that Proteome Discoverer exports I get the error below. I've downloaded the tutorial set and that worked fine and if I convert my RAW file to a mzXML and process it with Tandem then I can analyze the .tandem.pep.xml file with PeptideProphet. Basically do I need to reanalyze all my RAW files with Tandem or is it possible to export my Sequest result to TPP?
Thank you, Joseph Gillen C:/TPP/bin/xinteract (TPP v5.1.0 Syzygy, Build 201711031215-7670 (Windows_NT-x86_64)) PPM mode in Accurate Mass Model ... running: "C:/TPP/bin/InteractParser "/tmp/a06048/demo/tandem/interact.pep.xml" "171120_JG_4B_1.pep.xml" -L"7"" file 1: 171120_JG_4B_1.pep.xml command "C:/TPP/bin/InteractParser "/tmp/a06048/demo/tandem/interact.pep.xml" "171120_JG_4B_1.pep.xml" -L"7"" failed: Unknown error command "C:/TPP/bin/InteractParser "/tmp/a06048/demo/tandem/interact.pep.xml" "171120_JG_4B_1.pep.xml" -L"7"" exited with non-zero exit code: -1073741819 QUIT - the job is incomplete -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
