Hi Joseph, I have never tried to do that. Nevertheless, have you tried to refresh the paths of you pepxml files? Sometimes, if I run a search engine outside of the Petunia interface all issues are resolved after updating the paths (RAW files, database). Maybe you have luck.
Still, it might be that the file is not compatible. See: https://groups.google.com/forum/#!topic/spctools-discuss/u_rRqaBNd18 Best, Alejandro On Thursday, March 15, 2018 at 2:37:09 AM UTC+1, Joseph Gillen wrote: > > Hello, > > I recently discovered TPP and have been trying to analyze my recent data > from Proteome Discoverer 2.2 with PeptideProphet and every time I try to > analyze the .pep.xml file that Proteome Discoverer exports I get the error > below. I've downloaded the tutorial set and that worked fine and if I > convert my RAW file to a mzXML and process it with Tandem then I can > analyze the .tandem.pep.xml file with PeptideProphet. Basically do I need > to reanalyze all my RAW files with Tandem or is it possible to export my > Sequest result to TPP? > > Thank you, > Joseph Gillen > > C:/TPP/bin/xinteract (TPP v5.1.0 Syzygy, Build 201711031215-7670 > (Windows_NT-x86_64)) > PPM mode in Accurate Mass Model ... > running: "C:/TPP/bin/InteractParser > "/tmp/a06048/demo/tandem/interact.pep.xml" "171120_JG_4B_1.pep.xml" -L"7"" > file 1: 171120_JG_4B_1.pep.xml > > command "C:/TPP/bin/InteractParser "/tmp/a06048/demo/tandem/interact.pep.xml" > "171120_JG_4B_1.pep.xml" -L"7"" failed: Unknown error > > command "C:/TPP/bin/InteractParser "/tmp/a06048/demo/tandem/interact.pep.xml" > "171120_JG_4B_1.pep.xml" -L"7"" exited with non-zero exit code: -1073741819 > QUIT - the job is incomplete > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
