Hello Heeyoun. Thank you for your reply. I tried idconvert and it was successful in generating an .mzid file. However, it didn't work for my application. The DBSequence ID, Peptide Evidence ID, and spectrum ID are all blank. Maybe this is an issue having to do with the peptide prophet or protein prophet compatibility with idconvert. Thanks, again!
On Friday, May 4, 2018 at 5:51:48 AM UTC-4, Heeyoun Hwang wrote: > > Dear Alexander, > > I got the same problem with you, so I am trying to use idconvert. > > But I am not sure it works. > > Check my screenshot. > > Cheers! > > Heeyoun > > > <https://lh3.googleusercontent.com/-IhP9bfg5qxc/WuwtJXMhAOI/AAAAAAAAAx0/__kjrUtppHsoa5WX3fV0zYs3L-1D1w9sACLcBGAs/s1600/capture.PNG> > > > 2018년 4월 17일 화요일 오후 11시 2분 27초 UTC+9, Alexander Pelletier 님의 말: >> >> Hello all. >> I am trying to use the Export mzIndentML tool, under External Tools in >> tpp. I am using version TPP 5.1 on Windows 7. It doesn't seem to recognize >> the protxml file I want to convert (see attached image). This file was >> generated by doing a default comet search, peptide prophet, followed by >> protein prophet, all performed locally on this machine. Thank you! >> >> >> >> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
