Hi Emma, I think you are a version behind. Can you please try the latest version to see if it fixes the issue you've observed?
Thank you, -David On Sat, Jun 23, 2018, 3:38 PM Emma Whittington <[email protected]> wrote: > Hi David, > > I am using TPP 5.0.0. The modifications I'm specifying are M,15.994915 > STY,79.9663 K,79.9663. > > Thanks > > On 22 June 2018 at 18:28, David Shteynberg <David.Shteynberg@ > systemsbiology.org> wrote: > >> Hi Emma, >> >> Which version of the TPP are you running? Which modifications are you >> specifying when you run the tool? >> >> Thanks, >> -David >> >> On Fri, Jun 22, 2018 at 11:44 AM, Emma Whittington <[email protected]> >> wrote: >> >>> Good afternoon, >>> >>> I've trying to use PTMprophet to analyse my data and keep getting the >>> following error. Do you have any idea what's happening? >>> >>> INFO: Writing file bursa.ptmp.pep.xml ... >>> INFO: Reading file bursa.ptm.ipro.99.pep.xml ... >>> WARNING: Illegal peptide with unknown mod: WYNWGSYDASSGEC[160]C[160]K >>> WARNING: Unrecognized mod on peptide: >>> LPLYM[147]STK[170]NTILK[170] >>> WARNING: Cannot initialize for sequence: LPLYM[147]STK[170]NTILK[170], >>> unknown mods may exist in spectrum AkankshaSingh10356322_HighMW_ >>> 10.09626.09626.4 >>> Segmentation fault (core dumped) >>> >>> >>> thank you very much, >>> >>> Emma >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To post to this group, send email to [email protected]. >>> Visit this group at https://groups.google.com/group/spctools-discuss. >>> For more options, visit https://groups.google.com/d/optout. >>> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
