Hi, I'm trying to convert mascot-generated .dat files into pep.xml (using Petunia) so that I can combine them with other search engine results within TPP.
mascot2xml fails to recognise the enzyme 'semilysArginase' (specified when searching in mascot). Note - I can get fully enzymatic lysArginase mascot searches to work in mascot2xml, by using 'lysn_promisc' as the enzyme option within mascot2xml - however, when taking semi-specific lysArginase mascot searches and attempting to use 'lysn_promisc' with the semi option 'on' in mascot2xml, it fails. So the issue appears to be limited to processing semi-specific lysArginase search results only. The error appears as follows: lysn_promisc : cut(KR) sense(N) error: enzyme in search constraint "semiLysargiNase" is not recognized Please can someone advise if there is a workaround? Thanks Pete -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
