Hi all, I´m trying to use the Xpresspeptideparser to quantify dimethylated peptides - For the peptide search I used two independent searches (labeled K was set as static mod and the the labeled n-Term and acetylated prot N-term were set as variabel mod) under Comet (2018 rev. 1) and XTandem (Jackhammer). After peptide validation and merging the searches with peptideprophet and interprophet I ran the Xpress option from the commandline.
Most of the ratios looks fine, but some of them needs to be reevaluated by eye - So there are two questions regarding the pepXML Viewer: 1. I noticed the huge increase in the original pepXML. The file was about 250 mb before I started evaluating the ratios, but after checking several of them, the file is now almost 1 gb. I wonder if it is possible to prevent the increase of the file size or if its possible to split the file pep.xml in several pepXML´s of less size? 2. The updating of reevaluated ratios in the original pepXML files takes a lot of time and it is not possible to update two ratios at the same time. Is there anything what one can do to speed up the process? Thanks in advance, Cheers Max -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
