Hi all,
I’m a bit stuck on importing an existing PeakView library (tsv or txt format) into SpectraST. In the log file from SpectraST it says the following : START: (Mon Jul 16 14:16:51 2018) spectrast -cNimported out.tsv GENERAL: File offset size is 8 bytes. Big library supported. GENERAL: Pointer size is 8 bytes. TSV IMPORT: Peptide ID too short. Skipped spectrum 778.427.427 . TSV IMPORT: Peptide ID too short. Skipped spectrum 778.498.498 . TSV IMPORT: Peptide ID too short. Skipped spectrum 778.569.569 . TSV IMPORT: Peptide ID too short. Skipped spectrum 778.214.214 . … CREATE: IMPORT FROM TSV "c:/TPP/data/dbase/speclibs/test/out.tsv"[P=0.9;n=;g=FALSE;o=FALSE;I=;_RNT=0;_RDR=100000;_DCN=0;_NAA=6;_NPK=10;_CEN=FALSE;_XAN=FALSE] TSV IMPORT: Total of 0 spectra imported, 3531720 spectra skipped. PERFORMANCE: Total Run Time = 54 seconds. END: (Mon Jul 16 14:17:45 2018) spectrast -cNimported out.tsv The column formats I've tried are: Q1 Q3 RT_detected protein_name isotype relative_intensity stripped_sequence modification_sequence prec_z frg_type frg_z frg_nr iRT uniprot_id decoy N confidence shared and PrecursorMz ProductMz Tr_recalibrated transition_name CE LibraryIntensity transition_group_id ProteinName GroupLabel PeptideSequence FullUniModPeptideName UniprotID decoy shared confidence PrecursorCharge FragmentType FragmentCharge FragmentSeriesNumber Any ideas? Moritz -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
