Hi there, I am using TPP v5.2.0-b1 Flammagenitus Pre-release Beta, Build 201809101205-7809 (Linux-x86_64) with Kojak pep.xml data running the following command: /usr/local/tpp/bin/xinteract -Ninteract.pep.xml -p0 -l1 -eT -PPM -OAPdp -drandom_ -ip file1.pep.xml file3.pep.xml file3.pep.xml
This command runs to completion, however looking in the output I see: .... running: "/usr/local/tpp/bin/ProphetModels.pl -i interact.pep.xml -d "random_"" Analyzing interact.pep.xml ... .... => Total so far: 134784 hits. (3317 decoys, 0 excluded) Using decoy ratio of 0.0284042151512031 for PeptideProphet. Inserting decoy analysis tags in line 4542 of interact.pep.xml Running tpp_models... *Can't exec "tpp_models.pl": No such file or directory at /usr/local/tpp/bin/ProphetModels.pl line 1179.* Done command completed in 35 sec ... Should I be concerned by this? I get this error twice during the run. Later in the output the same command is run but this time a filename is given to tpp_models.pl and the program then runs with no errors: running: "/usr/local/tpp/bin/tpp_models.pl '/path/to/interact.pep.xml'" File: /path/to/interact.pep.xml - in ms run: /path/to/file1... - in ms run: /path/to/file2... - in ms run: /path/to/file3... ------------------------------------------------------------------------------- TPP DASHBOARD -- started at Mon Oct 1 16:03:50 2018 ------------------------------------------------------------------------------- File /path/to/interact.pep.xml is pepxml Found fval (+1) model... etc... tpp_models.pl is present and executable on the computer's filesystem so I assume this error is due to tpp_models.pl not being given a file to operate on in the instances where there is a "no such file" error. Am I safe to ignore this? Thanks! Alex -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
