Hi Brian, Can you post the files for me to trace the execution of RefreshParser and troubleshoot the issue?
Thanks, -David On Tue, Jan 29, 2019 at 7:24 AM Hampton, Brian <[email protected]> wrote: > Hello, > > I cannot determine why RefreshParser would not be able to remap all > entries. Since the PSMs are derived from the fasta db used in the search, I > would expect all PSMs to map to their respective database entries. For > example: > > running: "/usr/local/tpp/bin/RefreshParser > '/tmp/X33oJO/data/SMC/16-18-27-6094/source/interact-a-2.pep.xml' > '/usr/local/tpp/data/dbase/human-reviewed-190128_DECOY-crap.fasta'" - > Building Commentz-Walter keyword tree... > - Searching the tree... > - Linking duplicate entries... > - Printing results... > Warning: could not map 3081 entries > > command completed in 5 sec > > Thanks in advance for any help. > > Brian > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
