Hello, You can now download a new version of TPP (5.2) which includes the fix to this issue. https://sourceforge.net/projects/sashimi/files/Trans-Proteomic%20Pipeline%20%28TPP%29/TPP%20v5.2%20%28Flammagenitus%29%20rev%200/ Cheers, --Luis
On Thu, Feb 21, 2019 at 12:19 PM Goutham Vasam <[email protected]> wrote: > Thank you Dr. Hoopmann! Where can I obtain the release candidates? > > On Thursday, 21 February 2019 14:50:02 UTC-5, Michael Hoopmann wrote: >> >> Hi Goutham, >> >> The problem you have is likely fixed in the next release of the TPP (due >> in a few weeks). Or you can grab it from the release candidates we >> currently offer. >> >> Cheers, >> >> Mike >> >> >> >> *From:* [email protected] [mailto:[email protected]] >> *On Behalf Of *Goutham Vasam >> *Sent:* Thursday, February 21, 2019 11:31 AM >> *To:* spctools-discuss >> *Subject:* [spctools-discuss] StPeter ERROR: Unknown modification: C[158] >> >> >> >> Hi, >> >> While running StPeter on TPP, I received an error with following details: >> >> StPeter: MS2 intensity-based label-free quantification >> >> Copyright 2015-2017, Jason Winget, Michael Hoopmann, Institute for Systems >> Biology >> >> Version 1.2.0 October 11 2017 >> >> ****** BEGIN StPeter ANALYSIS ****** >> >> Time at start of analysis: Thu Feb 21 14:23:02 2019 >> >> >> >> Parameters: >> >> degenerate peptides = no >> >> fdr = 0.01 >> >> sample load = 0 >> >> tolerance = 0.4 >> >> intensities = no >> >> >> >> Reading protXML: >> c:/TPP/data/Goutham/Proteomics_Run_December_2018_B_AA_30_60_120min_Raw_data/All_modifications/AA120_35_1/interact.ipro.prot.xml >> >> ERROR: Unknown modification: C[158] >> >> Please report to authors. >> >> >> >> *Command **FAILED* >> RETURN CODE:256 >> >> I have attached the XML file and comet.params file. I emailed Dr. >> Hoopmann (as it said report to authors). If there are alternate ways, I >> would appreciate any help. Thank you! >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
