Hello,
I'm hoping someone can help, the installation instructions
<http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.2.0:_Installing_on_Ubuntu_18.04_LTS#Pulling_the_TPP_5.2.0_source_code_from_SourceForge>
mention I should post the error message here. Below is the error message
I'm getting stuck at when attempting to compile comet.
[~/TPP/release_5-2-0]$ make all
cd /root/TPP/release_5-2-0/build/gnu-x86_64/artifacts/comet_source_2018014;
make
make[1]: Entering directory
'/root/TPP/release_5-2-0/build/gnu-x86_64/artifacts/comet_source_2018014'
g++ -O3 -Wall -Wextra -static -Wno-char-subscripts -D_LARGEFILE_SOURCE
-D_FILE_OFFSET_BITS=64 -D__LINUX__ -IMSToolkit/include -ICometSearch
Comet.cpp -c
In file included from CometSearch/Common.h:40,
from Comet.cpp:18:
MSToolkit/include/MSReader.h:96:80: error: invalid conversion from âcharâ
to âchar*â [-fpermissive]
void writeFile(const char* c, MSFileFormat ff, MSObject& m, char*
sha1Report='\0');
^~~~
Comet.cpp: In function âvoid LoadParameters(char*,
CometInterfaces::ICometSearchManager*)â:
Comet.cpp:235:24: warning: passing argument 1 to restrict-qualified
parameter aliases with argument 3 [-Wrestrict]
sprintf(szVersion, "%s %s %s", szVersion, szRev1, szRev2);
^~~~~~~~~ ~~~~~~~~~
Makefile:20: recipe for target 'Comet.o' failed
make[1]: *** [Comet.o] Error 1
make[1]: Leaving directory
'/root/TPP/release_5-2-0/build/gnu-x86_64/artifacts/comet_source_2018014'
extern/Makefile:353: recipe for target
'/root/TPP/release_5-2-0/build/gnu-x86_64/artifacts/comet_source_2018014/comet'
failed
make: ***
[/root/TPP/release_5-2-0/build/gnu-x86_64/artifacts/comet_source_2018014/comet]
Error 2
[~/TPP/release_5-2-0 ]$ g++ -v
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/8/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Debian 8.3.0-6'
--with-bugurl=file:///usr/share/doc/gcc-8/README.Bugs
--enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr
--with-gcc-major-version-only --program-suffix=-8
--program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id
--libexecdir=/usr/lib --without-included-gettext --enable-threads=posix
--libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu
--enable-libstdcxx-debug --enable-libstdcxx-time=yes
--with-default-libstdcxx-abi=new --enable-gnu-unique-object
--disable-vtable-verify --enable-libmpx --enable-plugin
--enable-default-pie --with-system-zlib --with-target-system-zlib
--enable-objc-gc=auto --enable-multiarch --disable-werror
--with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32
--enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none
--without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu
--host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 8.3.0 (Debian 8.3.0-6)
[~/TPP/release_5-2-0 ]$ lsb_release -a
No LSB modules are available.
Distributor ID: Debian
Description: Debian GNU/Linux unstable (sid)
Release: unstable
Codename: sid
[~/TPP/release_5-2-0 ]$
Any assistance would be greatly appreciated.
Thanks,
-Dean
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