Hi, In the publication describing StPeter it is said that for statistical analysis of quantitative StPeter results "We currently recommend using MSstats(12) on protein-level normalized spectral indices with internal MSstats normalization disabled". I tried to create an input file for MSstats from my prot.xml files with spectral indexes obtained from StPeter. However, thses values are typically in range from 0 to 1, and MSstats automatically replaces them with zero values when processing the input file. Do you have any suggested workflow on how to make StPeter spectal index values suitable for MSstats?
Best, Dmytro Morderer -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
