Hi, I tried to analyze my DSS and DMTMM cross-linking data using Kojak and PeptideProphet. Kojak run properly, however Peptideprophet claims for Trypsin GluC digestion, which is not defined. Kojak could handle it. Why does PeptideProphet need the enzyme info at all?
Is this possible to define for PeptideProphet the TryGluC "enzyme"? i could not find it in the I read in the bioRxiv Mendes et al publication 'An integrated workflow for cross-linking/mass spectrometry" , that ".....we and the developers of these tools could not pair Kojak with PeptideProphet for sequential digestion." Thanks for answers in advance. best Zsuzsi -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/b99a0ebf-2552-4622-ad8b-68d92f91fac7%40googlegroups.com.
