Okay, well, assuming you’re still getting this error, I would need more information to suggest a next course of action. Can you send the output of this:
cd /home/tpp ls -al ls -al lib ls -al lib/perl export PERL5LIB=/home/tpp/lib/perl echo $PERL5LIB perl -v cd bin ./test_tpi.pl ? *From:* [email protected] <[email protected]> *On Behalf Of *Shagun Gupta *Sent:* Tuesday, December 3, 2019 9:54 AM *To:* spctools-discuss <[email protected]> *Subject:* Re: [spctools-discuss] Perl library errors: Centos 7 yes! Apart from some library changes (because of Centos) and path to the directories, I didn't change anything and didn't have any issues with make install! On Monday, December 2, 2019 at 10:51:54 PM UTC-5, Eric Deutsch wrote: So then you did: cd /home/tpp/bin export PERL5LIB=/home/tpp/lib/perl ./test_tpi.pl ? *From:* [email protected] <javascript:> < [email protected] <javascript:>> *On Behalf Of *Shagun Gupta *Sent:* Monday, December 2, 2019 6:47 PM *To:* spctools-discuss <[email protected] <javascript:>> *Subject:* Re: [spctools-discuss] Perl library errors: Centos 7 Hi Eric I did do make install step. TPP was installed in /home/tpp and I changed all the directory specs accordingly! On Friday, November 22, 2019 at 3:25:50 PM UTC-5, Eric Deutsch wrote: Hi Shagan, did you perform the `make install` step? Was TPP actually installed in /usr/local/tpp? Or was it installed somewhere else? *From:* [email protected] <[email protected]> *On Behalf Of *Shagun Gupta *Sent:* Friday, November 22, 2019 11:33 AM *To:* spctools-discuss <[email protected]> *Subject:* [spctools-discuss] Perl library errors: Centos 7 Hi I have been trying to install TPP (Sashimi) on a Centos 7 server. I don't have any issues with make. However, on downloading perl libraries as specified here: http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.2.0:_Installing_on_Ubuntu_18.04_LTS and checking for installation of all with, cd /usr/local/tpp/bin export PERL5LIB=/usr/local/tpp/lib/perl ./test_tpi.pl I get the warning that the following three libraries (TPP, TPP::StatUtilities and tpplib_perl) are missing. I am not sure how to download them since cpan can't find them by name and ".pm" files are in the folder "/home/tpp/svn/trans_proteomic_pipeline/perl/lib". -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/9de7be5b-82f1-4878-b2c6-ea9e3f46d779%40googlegroups.com <https://groups.google.com/d/msgid/spctools-discuss/9de7be5b-82f1-4878-b2c6-ea9e3f46d779%40googlegroups.com?utm_medium=email&utm_source=footer> . -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected] <javascript:>. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/2342eaa6-6c80-4ee4-ab43-430bf4379966%40googlegroups.com <https://groups.google.com/d/msgid/spctools-discuss/2342eaa6-6c80-4ee4-ab43-430bf4379966%40googlegroups.com?utm_medium=email&utm_source=footer> . -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/bf2b60f9-37b0-4e44-a102-dedeb928ccd9%40googlegroups.com <https://groups.google.com/d/msgid/spctools-discuss/bf2b60f9-37b0-4e44-a102-dedeb928ccd9%40googlegroups.com?utm_medium=email&utm_source=footer> . -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/fd8d05b5c2160b6d11c9f7cb4bee6893%40mail.gmail.com.
