Hi Eric ls -al gives me:
total 36 drwx------. 17 tpp tpp 4096 Nov 13 11:10 . drwxr-xr-x. 8 root root 109 Nov 11 14:45 .. -rw-------. 1 tpp tpp 2930 Nov 21 14:44 .bash_history -rw-r--r--. 1 tpp tpp 18 Oct 30 2018 .bash_logout -rw-r--r--. 1 tpp tpp 193 Oct 30 2018 .bash_profile -rw-r--r--. 1 tpp tpp 231 Oct 30 2018 .bashrc drwxr-xr-x. 2 tpp tpp 4096 Nov 11 16:08 bin drwxrwxr-x. 3 tpp tpp 26 Nov 11 14:43 .cache drwxr-xr-x. 2 tpp tpp 4096 Nov 11 16:08 cgi-bin drwxr-xr-x. 2 tpp tpp 4096 Nov 11 16:08 conf drwxrwxr-x. 3 tpp tpp 26 Nov 11 14:43 .config drwxrwxr-x. 6 tpp tpp 123 Nov 16 14:07 .cpan drwxr-xr-x. 6 tpp tpp 204 Nov 11 16:08 html drwxr-xr-x. 4 tpp tpp 42 Nov 11 16:08 lib drwxr-xr-x. 12 tpp tpp 189 Nov 11 16:08 lic drwxr-xr-x. 2 tpp tpp 10 Nov 11 16:08 log drwxr-xr-x. 4 tpp tpp 42 Nov 11 16:08 man drwxr-xr-x. 2 tpp tpp 4096 Nov 11 16:08 schema drwxrwxr-x. 3 tpp tpp 85 Nov 11 14:46 .subversion drwxrwxr-x. 3 tpp tpp 46 Nov 11 14:46 svn drwxr-xr-x. 3 tpp tpp 27 Nov 11 16:08 users ls -al lib gives me: total 8 drwxr-xr-x. 4 tpp tpp 42 Nov 11 16:08 . drwx------. 17 tpp tpp 4096 Nov 13 11:10 .. drwxr-xr-x. 3 tpp tpp 4096 Nov 11 16:08 Mayu drwxr-xr-x. 3 tpp tpp 69 Nov 11 16:08 perl ls -al lib/perl gives me: total 12 drwxr-xr-x. 3 tpp tpp 69 Nov 11 16:08 . drwxr-xr-x. 4 tpp tpp 42 Nov 11 16:08 .. drwxr-xr-x. 2 tpp tpp 38 Nov 11 16:08 TPP -r--r--r--. 1 tpp tpp 4873 Nov 11 16:08 tpplib_perl.pm -r--r--r--. 1 tpp tpp 1359 Nov 11 16:08 TPP.pm export PERL5LIB=/home/tpp/lib/perl echo $PERL5LIB gives me: /home/tpp/lib/perl perl -v gives me: This is perl 5, version 16, subversion 3 (v5.16.3) built for x86_64-linux-thread-multi (with 39 registered patches, see perl -V for more detail) Copyright 1987-2012, Larry Wall Perl may be copied only under the terms of either the Artistic License or the GNU General Public License, which may be found in the Perl 5 source kit. Complete documentation for Perl, including FAQ lists, should be found on this system using "man perl" or "perldoc perl". If you have access to the Internet, point your browser at http://www.perl.org/, the Perl Home Page. cd bin ./test_tpi.pl Now shows me that all the libraries have been installed! Looks like I might have had an error typing the PERL5LIB pathway. Thanks a lot! -Shagun On Tuesday, December 3, 2019 at 2:27:07 PM UTC-5, Eric Deutsch wrote: > > Okay, well, assuming you’re still getting this error, I would need more > information to suggest a next course of action. Can you send the output of > this: > > > > cd /home/tpp > > ls -al > > ls -al lib > > ls -al lib/perl > > export PERL5LIB=/home/tpp/lib/perl > > echo $PERL5LIB > > perl -v > > cd bin > > ./test_tpi.pl > > > > ? > > > > > > > > *From:* [email protected] <javascript:> < > [email protected] <javascript:>> *On Behalf Of *Shagun Gupta > *Sent:* Tuesday, December 3, 2019 9:54 AM > *To:* spctools-discuss <[email protected] <javascript:>> > *Subject:* Re: [spctools-discuss] Perl library errors: Centos 7 > > > > yes! Apart from some library changes (because of Centos) and path to the > directories, I didn't change anything and didn't have any issues with make > install! > > > > On Monday, December 2, 2019 at 10:51:54 PM UTC-5, Eric Deutsch wrote: > > So then you did: > > > > cd /home/tpp/bin > > export PERL5LIB=/home/tpp/lib/perl > > ./test_tpi.pl > > > > ? > > > > > > > > *From:* [email protected] <[email protected]> *On > Behalf Of *Shagun Gupta > *Sent:* Monday, December 2, 2019 6:47 PM > *To:* spctools-discuss <[email protected]> > *Subject:* Re: [spctools-discuss] Perl library errors: Centos 7 > > > > Hi Eric > > > > I did do make install step. TPP was installed in /home/tpp and I changed > all the directory specs accordingly! > > > > > > On Friday, November 22, 2019 at 3:25:50 PM UTC-5, Eric Deutsch wrote: > > Hi Shagan, did you perform the `make install` step? Was TPP actually > installed in /usr/local/tpp? Or was it installed somewhere else? > > > > > > *From:* [email protected] <[email protected]> *On > Behalf Of *Shagun Gupta > *Sent:* Friday, November 22, 2019 11:33 AM > *To:* spctools-discuss <[email protected]> > *Subject:* [spctools-discuss] Perl library errors: Centos 7 > > > > Hi > > > > I have been trying to install TPP (Sashimi) on a Centos 7 server. I don't > have any issues with make. However, on downloading perl libraries as > specified here: > > > http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.2.0:_Installing_on_Ubuntu_18.04_LTS > > > > and checking for installation of all with, > > cd /usr/local/tpp/bin > > export PERL5LIB=/usr/local/tpp/lib/perl > > ./test_tpi.pl > > I get the warning that the following three libraries (TPP, > TPP::StatUtilities and tpplib_perl) are missing. I am not sure how to > download them since cpan can't find them by name and ".pm" files are in the > folder "/home/tpp/svn/trans_proteomic_pipeline/perl/lib". > > > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/9de7be5b-82f1-4878-b2c6-ea9e3f46d779%40googlegroups.com > > <https://groups.google.com/d/msgid/spctools-discuss/9de7be5b-82f1-4878-b2c6-ea9e3f46d779%40googlegroups.com?utm_medium=email&utm_source=footer> > . > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/2342eaa6-6c80-4ee4-ab43-430bf4379966%40googlegroups.com > > <https://groups.google.com/d/msgid/spctools-discuss/2342eaa6-6c80-4ee4-ab43-430bf4379966%40googlegroups.com?utm_medium=email&utm_source=footer> > . > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected] <javascript:>. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/bf2b60f9-37b0-4e44-a102-dedeb928ccd9%40googlegroups.com > > <https://groups.google.com/d/msgid/spctools-discuss/bf2b60f9-37b0-4e44-a102-dedeb928ccd9%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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