Dear Giangiacomo, Thanks for trying the TPP and reporting the problem. TPP uses the proteowizard's msconvert tools for this step. You can remedy the problem by either upgrading to a newer version of proteowizard's msconvert tool or use --ignoreUnknownInstrumentError option with your current version. On the generate mzML page you can specify this option in the "Enter additional options to pass directly to the command-line" text box, just enter the text --ignoreUnknownInstrumentError
Hope it works! Cheers, -David On Tue, Jan 19, 2021 at 8:10 AM giangiacomo beretta < giangiacomo.berett...@gmail.com> wrote: > Hi, when I try to convert raw files, the conversion tool stops immediately > reporting the following error: > > Reader_Thermo::fillInMetadata] unable to parse instrument model; please > report this error to the ProteoWizard developers with this information: > model(Orbitrap Eclipse) name(Orbitrap Eclipse); if want to convert the file > anyway, use the ignoreUnknownInstrumentError flag > > It appears that the system is not recognizing the instrument model that > produced the raw files. Is there any option to overcome this issue? > > Actually I have converted the same files with ProteoWizard without > troubles. > > Thanks in advance! > > G > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/2134bb9e-bb7e-4f52-9afc-bf59b75f21aen%40googlegroups.com > <https://groups.google.com/d/msgid/spctools-discuss/2134bb9e-bb7e-4f52-9afc-bf59b75f21aen%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CAGJJY%3D-%2BqUavKuvzzcooGDGzxzE4T_VOKLMmmOfbuyYPRnZ8qQ%40mail.gmail.com.
