Dear all, recently, msconvert stops in the middle of a Thermo raw file to mzxml conversion. For hours instead of minutes the conversion does not stop, but nothing happens. The command line code I use is: msconvert %%A --mzXML --filter "peakPicking cwt snr=5 peakSpace=0.3 msLevel=1-" --64 --zlib --outdir mzxml Is there a way to print error(?) messages to troubleshoot what is going on? Or is there a known bug that leads to such a problem? The GUI works fine and can convert the respective raw files. The proteowizard build is: ProteoWizard release: 3.0.1908 (43e675997) Build date: Jan 8 2019 16:13:49
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