Hi Malcolm, thank you for the corrections, the page is now updated. Let me know if you find any other problems.
http://tools.proteomecenter.org/wiki/index.php?title=TPP_6.1.0:_Installing_on_Ubuntu_20.04_LTS Thanks! Eric *From:* [email protected] <[email protected]> *On Behalf Of *Malcolm Cook *Sent:* Tuesday, June 7, 2022 7:50 PM *To:* spctools-discuss <[email protected]> *Subject:* Re: [spctools-discuss] Re: TPP 6.1.0 Release is now available Hi David, Indeed, the svn link I took from these instructions <http://tools.proteomecenter.org/wiki/index.php?title=TPP_6.1.0:_Installing_on_Ubuntu_20.04_LTS> is incorrect (and probably should be amended), while the link you advise (and appearing above in the announcement) is correct. BTW - I would offer to amend them myself but am unable to see if I am allowed to have an account on the wiki - seemingly not. FWIW - I do now find that downloading and expanding the tarball is many times faster then using svn, so I will prefer it going forward. Thanks, ~Malcolm On Tuesday, June 7, 2022 at 5:53:04 PM UTC-5 David Shteynberg wrote: Hi Malcolm, Thanks for your interest in the TPP. I think your url has a mistake in it. Please try the following command: svn checkout http://svn.code.sf.net/p/sashimi/code/tags/release_6-1-0 <http://svn.code.sf.net/p/sashimi/code/tags/release_6.1.0> Cheers, -David On Tue, Jun 7, 2022 at 3:44 PM Malcolm Cook <[email protected]> wrote: Hi, I am checking out again from the release_6.1.0 since my `make all` is problematic, I want to start over, and `make clean` seems perhaps incomplete in its cleaning. Alas I encounter this error whose workaround I can not guess: svn checkout http://svn.code.sf.net/p/sashimi/code/tags/release_6.1.0 svn: E170000: URL 'http://svn.code.sf.net/p/sashimi/code/tags/release_6.1.0' doesn't exist On Tuesday, June 7, 2022 at 12:37:31 AM UTC-5 Luis wrote: Hi Malcolm, Thank you for the congrats, and for catching that in our build notes; we will correct it soon. In the "Pulling from Sourceforge" section, just follow the commented-out command instead of the last one: #svn checkout http://svn.code.sf.net/p/sashimi/code/tags/release_6.1.0 <----- this one; remove the leading pound sign svn checkout http://svn.code.sf.net/p/sashimi/code/trunk/trans_proteomic_pipeline <---- not this one As of tonight, though, the trunk code is still virtually identical to what is tagged as release_6.1.0, so it should work fine. Let us know if you run into any other issues. Thank you for using TPP! --Luis On Mon, Jun 6, 2022 at 10:04 PM malcook <[email protected]> wrote: Congrats on the new release. You will probably want to modify these instructions <http://tools.proteomecenter.org/wiki/index.php?title=TPP_6.1.0:_Installing_on_Ubuntu_20.04_LTS>which still advise to download from trunk. I just followed them. Should I still expect this to work satisfactorily? Thanks On Friday, June 3, 2022 at 3:23:19 AM UTC-5 Luis wrote: Announcing the official release of Trans-Proteomic Pipeline (TPP) 6.1.0 "Parhelion" We are proud to offer a major update to the Trans-Proteomic Pipeline (TPP) software, release 6.1.0. The software is available for Windows as well as Linux from all the usual locations (please see the section below, "Getting the TPP Software"). Most users are recommended to use the Windows installer, which installs and configures TPP and other required software, such as a web server. For advanced users who need to customize TPP, or for those who run on Linux or OS X, the source code can be downloaded. *Release Notes * Release notes on the most important new features, changes, and known issues are available at: http://tools.proteomecenter.org/wiki/index.php?title=TPP:6.1.0_Release_Notes *Getting the TPP Software* Download the TPP version 6.1.0 native windows installer from the Sashimi SourceForge project file release page: https://sourceforge.net/projects/sashimi/files/Trans-Proteomic Pipeline (TPP)/TPP v6.1 (Parhelion) rev 0/ Everyone is encouraged to read and contribute to our wiki, at http://tools.proteomecenter.org/wiki/ For guides to installing and using our software, please see our wiki: http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP For downloading the source code, please go to the following link: http://sourceforge.net/projects/sashimi/files/ and find the 6.1.0 source code .zip package or, check out the code directly from svn: svn export svn://svn.code.sf.net/p/sashimi/code/tags/release_6-1-0 For building from source, please refer to the README and INSTALL files in src/ directory of TPP as well as the wiki. *Acknowledgements* The TPP Team: David, Luis, Mike, Eric, Jimmy, plus all other developers who contributed to this release from ISB. Thanks to developers and users from the TPP's user community who also provided feedback and code contributions. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/60dc756c-e679-4a3a-bd6b-74856abfe499n%40googlegroups.com <https://groups.google.com/d/msgid/spctools-discuss/60dc756c-e679-4a3a-bd6b-74856abfe499n%40googlegroups.com?utm_medium=email&utm_source=footer> . -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. 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