Greetings TPP folks, I just pulled the latest Docker image and am trying to run the Kojak then PeptideProphet. Kojak runs fine, PeptideProphet produces an error. Here is my output:
``` sudo docker run -v `pwd`:/data spctools/tpp xinteract QEHFX_2019_0510_AZ_034_eh220_comet.pep.xml xinteract (TPP v6.1.0 Parhelion, Build 202206071715-8676 (Linux-x86_64)) running: "/usr/local/tpp/bin/InteractParser 'interact.pep.xml' 'QEHFX_2019_0510_AZ_034_eh220_comet.pep.xml' -L'7'" file 1: QEHFX_2019_0510_AZ_034_eh220_comet.pep.xml processed altogether 77134 results INFO: Results written to file: /data/interact.pep.xml command completed in 5 sec running: "/usr/local/tpp/bin/DatabaseParser 'interact.pep.xml'" command completed in 1 sec running: "/usr/local/tpp/bin/RefreshParser 'interact.pep.xml' '/data/EH217_3pepCnt_plusRev.fasta'" enzyme name is:trypsin - Building Commentz-Walter keyword tree... - Searching the tree... - Linking duplicate entries... - Printing results... - Mapped 42490 entries command completed in 3 sec using MAXEHFX_2019_0510_AZ_034_eh220_comet.pep.xml for PeptideProphet... running: "/usr/local/tpp/bin/PeptideProphetParser 'interact.pep.xml'" (Kojak) init with Kojak trypsin init Loop model with Kojak trypsin adding XLSecondScoreFraction mixture distribution adding XLTopExpectScore mixture distribution init XL model with Kojak trypsin PeptideProphet (TPP v6.1.0 Parhelion, Build 202206071715-8676 (Linux-x86_64)) AKeller@ISB read in 0 1+, 0 2+, 0 3+, 0 4+, 0 5+, 0 6+, and 0 7+ spectra. read in no data MS Instrument info: Manufacturer: UNKNOWN, Model: UNKNOWN, Ionization: UNKNOWN, Analyzer: UNKNOWN, Detector: UNKNOWN INFO: Processing xl MixtureModel ... command "/usr/local/tpp/bin/PeptideProphetParser 'interact.pep.xml'" exited with non-zero exit code: 256 QUIT - the job is incomplete ``` I suspect the "read no data" line above, towards the end, is the culprit, but I can't guess what might be causing that. Do you have any ideas? Thanks, Mike Riffle -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/ee50b09f-4a8a-42f8-9eb3-1705200196a4n%40googlegroups.com.
