Hi Robert,

I think I see the problem.  TPP_BASEURL and TPP_DATAURL should be relative,
no start with '/',  try changing your site.mk to :

INSTALL_DIR = /usr/local/tpp
TPP_DATADIR = /data
TPP_BASEURL = tpp
TPP_DATAURL = tpp/data
TPP_PORT = 10401

Then you will need to make all and make install from scratch.  The easiest
way is to rename the previous build directory.

Cheers!
-David





On Mon, Apr 15, 2024 at 5:50 PM Robert Willows <rwillow...@gmail.com> wrote:

> Hi David,
>
> The site.mk file is:
> INSTALL_DIR = /usr/local/tpp
> TPP_DATADIR = /data
> TPP_BASEURL = /tpp
> TPP_DATAURL = /tpp/data
> TPP_PORT = 10401
>
> The output from http://localhost:10401/tpp/cgi-bin/check_env.pl is
> HTTP_ACCEPT =
> text/html,application/xhtml+xml,application/xml;q=0.9,image/avif,image/webp,image/apng,*/*;q=0.8,application/signed-exchange;v=b3;q=0.7
> HTTP_SEC_CH_UA_PLATFORM = "Linux"
> REQUEST_URI = /tpp/cgi-bin/check_env.pl
> HTTP_SEC_FETCH_MODE = navigate
> PATH =
> /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin
> SCRIPT_FILENAME = /usr/local/tpp/cgi-bin/check_env.pl
> SERVER_SOFTWARE = Apache/2.4.52 (Ubuntu)
> WEBSERVER_ROOT = /usr/local/tpp
> SERVER_NAME = localhost
> CONTEXT_PREFIX = //tpp/cgi-bin
> REMOTE_ADDR = ::1
> SCRIPT_URI = http://localhost:10401/tpp/cgi-bin/check_env.pl
> TPP_DATADIR = /data
> HTTP_CONNECTION = keep-alive
> HTTP_SEC_CH_UA = "Google Chrome";v="123", "Not:A-Brand";v="8",
> "Chromium";v="123"
> HTTP_SEC_FETCH_USER = ?1
> REQUEST_METHOD = GET
> SCRIPT_NAME = /tpp/cgi-bin/check_env.pl
> SEQ2MS_SOURCE_URL = _SEQ2MS_SOURCE_URL_
> SCRIPT_URL = /tpp/cgi-bin/check_env.pl
> HTTP_ACCEPT_ENCODING = gzip, deflate, br, zstd
> SERVER_SIGNATURE =Apache/2.4.52 (Ubuntu) Server at localhost Port 10401
> HTTP_USER_AGENT = Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36
> (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36
> REMOTE_PORT = 49404
> TPP_BASEURL = //tpp
> TPP_DATAURL = //tpp/data
> USERPROFILE = /usr/local/tpp
> GATEWAY_INTERFACE = CGI/1.1
> HTTP_HOST = localhost:10401
> CONTEXT_DOCUMENT_ROOT = /usr/local/tpp/cgi-bin
> HTTP_ACCEPT_LANGUAGE = en-GB,en-US;q=0.9,en;q=0.8
> PERL5LIB = /usr/local/tpp/lib/perl
> DOCUMENT_ROOT = /var/www/html
> REQUEST_SCHEME = http
> SEQ2MS_DEFAULT_MODEL = _SEQ2MS_DEFAULT_MODEL_
> QUERY_STRING =
> SERVER_ADMIN = [no address given]
> HTTP_SEC_FETCH_SITE = none
> WEBSERVER_TMP = /tmp
> SERVER_PROTOCOL = HTTP/1.1
> HTTP_UPGRADE_INSECURE_REQUESTS = 1
> HTTP_SEC_FETCH_DEST = document
> SERVER_PORT = 10401
> SERVER_ADDR = ::1
> SSRCALC = /usr/local/tpp/conf
> HTTP_SEC_CH_UA_MOBILE = ?0
> TPP_HOME = /usr/local/tpp
>
>
>
>
> On Tuesday, April 16, 2024 at 12:01:17 AM UTC+10 David Shteynberg wrote:
>
> Hi Robert,
>
> Thanks for trying to install and use TPP on Ubuntu.  It seems the
> webserver is somewhat misconfigured for tpp on your system.  Can you share
> the site.mk file that you are using for this build as this file allows to
> control the PATHs and URLS used by TPP?
>
> Thanks!
> -David
>
>
> On Mon, Apr 15, 2024, 1:08 AM Robert Willows <rwill...@gmail.com> wrote:
>
>
> I just finished building and installing TPP 7.0 under Ubuntu. All appears
> well until I go to http://localhost:10401/tpp/cgi-bin/tpp_gui.pl
>
> The login appears:
> ISB/SPC Trans Proteomic Pipeline ::
> .....
>  TPP v7.0.0 Arafel, Build 202404151216-exported (Linux-x86_64)
>
> But after entering guest as username and password the pages goes to:
> http://tpp/cgi-bin/tpp_gui.pl
> and
> This site can’t be reached
>
> Check if there is a typo in tpp.
> DNS_PROBE_FINISHED_NXDOMAIN
>
> Apache error logs are empty and access log is:
> 127.0.1.1:80 ::1 - - [15/Apr/2024:17:47:01 +1000] "GET /tpp/cgi-bin/
> tpp_gui.pl HTTP/1.1" 200 1076 "-" "Mozilla/5.0 (X11; Linux x86_64)
> AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36"
> 127.0.1.1:80 ::1 - - [15/Apr/2024:17:47:53 +1000] "-" 408 0 "-" "-"
>
> Any help or incites as I feel I've exhausted possibilities.
>
>
>
>
>
>
>
>
>
>
>  TPP v7.0.0 Arafel, Build 202404151216-exported (Linux-x86_64)
>
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