Hi Robert, The fact that the css is not loading is an strong indication that the apache configuration is not correct.
I just built a 7.0.0 TPP instance on a fresh ubuntu 22.04.4 "jammy" node in the Azure "cloud", using instructions here: http://tools.proteomecenter.org/wiki/index.php?title=TPP_7.0.0:_Installing_on_Ubuntu_22.04_LTS#Configuring_the_Apache_web_server It seems to load as expected. Sorry, but I am not sure why your specific instance is becoming misconfigured. Perhaps you can launch another node in the cloud, try setting it up there and if you run into trouble I can log in and help troubleshoot? Cheers, -David On Tue, Apr 16, 2024 at 2:02 PM Robert Willows <[email protected]> wrote: > Hi David, > > The style sheet isn’t loading. Just a very basic login screen missing the > usual TPP style. > The same when running the other cgi’s from the browser/s. > No not serving any other sites from this server. > > Regards > Robert > > On 17 Apr 2024, at 12:53 AM, 'David Shteynberg' via spctools-discuss < > [email protected]> wrote: > > > This seems to be a configuration issue but I am not sure where, likely in > the server. It appears you are running apache 2.4.x (same as I, on my > phone ubuntu emulator ;) which is in configured by http-2.4-tpp.conf. This > file should be first configured by site.mk at make install. You should > not have to modify this file, perhaps only for testing. Is the css > stylesheet loading for you on the login screen? Can you provide a > screenshot? Are you serving any other sites from this server? > > Thanks! > > > On Mon, Apr 15, 2024, 11:50 PM Robert Willows <[email protected]> > wrote: > >> one more piece of puzzle. >> The httpd-tpp.conf has: >> ## Set the TPP's environment variables >> SetEnv TPP_HOME /usr/local/tpp >> SetEnv TPP_DATADIR /data >> SetEnv SEQ2MS_SOURCE_URL _SEQ2MS_SOURCE_URL_ >> SetEnv SEQ2MS_DEFAULT_MODEL _SEQ2MS_DEFAULT_MODEL_ >> SetEnv TPP_BASEURL /tpp >> SetEnv TPP_DATAURL /tpp/data >> >> When I change the TPP_BASEURL and TPP_DATAURL to the same as in the >> site.mk file >> SetEnv TPP_BASEURL tpp >> SetEnv TPP_DATAURL tpp/data >> >> The login screen then goes to: >> http://localhost:10401/tpp/cgi-bin/tpp/cgi-bin/tpp_gui.pl >> Site not found. >> So it is adding an additional tpp/cgi-bin/ to the path after login as >> guest. >> >> Is this a webserver config issue or a tpp issue? >> >> >> >> On Tuesday, April 16, 2024 at 1:14:03 PM UTC+10 Robert Willows wrote: >> >>> Hi David, >>> >>> I've changed the site.mk and recompiled. >>> Deleted the old install in the /usr/local/tpp directory and reinstalled >>> withy make install. >>> Restarted everything but still have the same issue. >>> >>> Still goes to http://tpp/cgi-bin/tpp_gui.pl after entering guest >>> username and password. >>> I've tried some of the other cgi-bin programs in place of tpp_gui.pl >>> http://localhost:10401/tpp/cgi-bin/XXXXX and they all run and give >>> somewhat of the expected output given no files, except for >>> http://localhost:10401/tpp/cgi-bin/tpp_gui_config.pl >>> >>> Internal Server Error >>> >>> The server encountered an internal error or misconfiguration and was >>> unable to complete your request. >>> >>> Please contact the server administrator at [no address given] to inform >>> them of the time this error occurred, and the actions you performed just >>> before this error. >>> >>> More information about this error may be available in the server error >>> log. >>> >>> [Tue Apr 16 13:08:10.934308 2024] [cgid:error] [pid 841488:tid >>> 140546230744960] (8)Exec format error: AH01241: exec of >>> '/usr/local/tpp/cgi-bin/tpp_gui_config.pl' failed >>> >>> [Tue Apr 16 13:08:10.934745 2024] [cgid:error] [pid 841395:tid >>> 140546200757824] [client ::1:38680] End of script output before headers: >>> tpp_gui_config.pl >>> On Tuesday, April 16, 2024 at 11:02:17 AM UTC+10 David Shteynberg wrote: >>> >>>> Hi Robert, >>>> >>>> I think I see the problem. TPP_BASEURL and TPP_DATAURL should be >>>> relative, no start with '/', try changing your site.mk to : >>>> >>>> INSTALL_DIR = /usr/local/tpp >>>> TPP_DATADIR = /data >>>> TPP_BASEURL = tpp >>>> TPP_DATAURL = tpp/data >>>> TPP_PORT = 10401 >>>> >>>> Then you will need to make all and make install from scratch. The >>>> easiest way is to rename the previous build directory. >>>> >>>> Cheers! >>>> -David >>>> >>>> >>>> >>>> >>>> >>>> On Mon, Apr 15, 2024 at 5:50 PM Robert Willows <[email protected]> >>>> wrote: >>>> >>>>> Hi David, >>>>> >>>>> The site.mk file is: >>>>> INSTALL_DIR = /usr/local/tpp >>>>> TPP_DATADIR = /data >>>>> TPP_BASEURL = /tpp >>>>> TPP_DATAURL = /tpp/data >>>>> TPP_PORT = 10401 >>>>> >>>>> The output from http://localhost:10401/tpp/cgi-bin/check_env.pl is >>>>> HTTP_ACCEPT = >>>>> text/html,application/xhtml+xml,application/xml;q=0.9,image/avif,image/webp,image/apng,*/*;q=0.8,application/signed-exchange;v=b3;q=0.7 >>>>> HTTP_SEC_CH_UA_PLATFORM = "Linux" >>>>> REQUEST_URI = /tpp/cgi-bin/check_env.pl >>>>> HTTP_SEC_FETCH_MODE = navigate >>>>> PATH = >>>>> /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin >>>>> SCRIPT_FILENAME = /usr/local/tpp/cgi-bin/check_env.pl >>>>> SERVER_SOFTWARE = Apache/2.4.52 (Ubuntu) >>>>> WEBSERVER_ROOT = /usr/local/tpp >>>>> SERVER_NAME = localhost >>>>> CONTEXT_PREFIX = //tpp/cgi-bin >>>>> REMOTE_ADDR = ::1 >>>>> SCRIPT_URI = http://localhost:10401/tpp/cgi-bin/check_env.pl >>>>> TPP_DATADIR = /data >>>>> HTTP_CONNECTION = keep-alive >>>>> HTTP_SEC_CH_UA = "Google Chrome";v="123", "Not:A-Brand";v="8", >>>>> "Chromium";v="123" >>>>> HTTP_SEC_FETCH_USER = ?1 >>>>> REQUEST_METHOD = GET >>>>> SCRIPT_NAME = /tpp/cgi-bin/check_env.pl >>>>> SEQ2MS_SOURCE_URL = _SEQ2MS_SOURCE_URL_ >>>>> SCRIPT_URL = /tpp/cgi-bin/check_env.pl >>>>> HTTP_ACCEPT_ENCODING = gzip, deflate, br, zstd >>>>> SERVER_SIGNATURE =Apache/2.4.52 (Ubuntu) Server at localhost Port >>>>> 10401 >>>>> HTTP_USER_AGENT = Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 >>>>> (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36 >>>>> REMOTE_PORT = 49404 >>>>> TPP_BASEURL = //tpp >>>>> TPP_DATAURL = //tpp/data >>>>> USERPROFILE = /usr/local/tpp >>>>> GATEWAY_INTERFACE = CGI/1.1 >>>>> HTTP_HOST = localhost:10401 >>>>> CONTEXT_DOCUMENT_ROOT = /usr/local/tpp/cgi-bin >>>>> HTTP_ACCEPT_LANGUAGE = en-GB,en-US;q=0.9,en;q=0.8 >>>>> PERL5LIB = /usr/local/tpp/lib/perl >>>>> DOCUMENT_ROOT = /var/www/html >>>>> REQUEST_SCHEME = http >>>>> SEQ2MS_DEFAULT_MODEL = _SEQ2MS_DEFAULT_MODEL_ >>>>> QUERY_STRING = >>>>> SERVER_ADMIN = [no address given] >>>>> HTTP_SEC_FETCH_SITE = none >>>>> WEBSERVER_TMP = /tmp >>>>> SERVER_PROTOCOL = HTTP/1.1 >>>>> HTTP_UPGRADE_INSECURE_REQUESTS = 1 >>>>> HTTP_SEC_FETCH_DEST = document >>>>> SERVER_PORT = 10401 >>>>> SERVER_ADDR = ::1 >>>>> SSRCALC = /usr/local/tpp/conf >>>>> HTTP_SEC_CH_UA_MOBILE = ?0 >>>>> TPP_HOME = /usr/local/tpp >>>>> >>>>> >>>>> >>>>> >>>>> On Tuesday, April 16, 2024 at 12:01:17 AM UTC+10 David Shteynberg >>>>> wrote: >>>>> >>>>> Hi Robert, >>>>> >>>>> Thanks for trying to install and use TPP on Ubuntu. It seems the >>>>> webserver is somewhat misconfigured for tpp on your system. Can you share >>>>> the site.mk file that you are using for this build as this file >>>>> allows to control the PATHs and URLS used by TPP? >>>>> >>>>> Thanks! >>>>> -David >>>>> >>>>> >>>>> On Mon, Apr 15, 2024, 1:08 AM Robert Willows <[email protected]> >>>>> wrote: >>>>> >>>>> >>>>> I just finished building and installing TPP 7.0 under Ubuntu. All >>>>> appears well until I go to >>>>> http://localhost:10401/tpp/cgi-bin/tpp_gui.pl >>>>> >>>>> The login appears: >>>>> ISB/SPC Trans Proteomic Pipeline :: >>>>> ..... >>>>> TPP v7.0.0 Arafel, Build 202404151216-exported (Linux-x86_64) >>>>> >>>>> But after entering guest as username and password the pages goes to: >>>>> http://tpp/cgi-bin/tpp_gui.pl >>>>> and >>>>> This site can’t be reached >>>>> >>>>> Check if there is a typo in tpp. >>>>> DNS_PROBE_FINISHED_NXDOMAIN >>>>> >>>>> Apache error logs are empty and access log is: >>>>> 127.0.1.1:80 ::1 - - [15/Apr/2024:17:47:01 +1000] "GET /tpp/cgi-bin/ >>>>> tpp_gui.pl HTTP/1.1" 200 1076 "-" "Mozilla/5.0 (X11; Linux x86_64) >>>>> AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36" >>>>> 127.0.1.1:80 ::1 - - [15/Apr/2024:17:47:53 +1000] "-" 408 0 "-" "-" >>>>> >>>>> Any help or incites as I feel I've exhausted possibilities. >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> TPP v7.0.0 Arafel, Build 202404151216-exported (Linux-x86_64) >>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "spctools-discuss" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to [email protected]. >>>>> To view this discussion on the web visit >>>>> https://groups.google.com/d/msgid/spctools-discuss/efaa2e37-fa8a-482a-aeda-4bb044a6b5ean%40googlegroups.com >>>>> <https://groups.google.com/d/msgid/spctools-discuss/efaa2e37-fa8a-482a-aeda-4bb044a6b5ean%40googlegroups.com?utm_medium=email&utm_source=footer> >>>>> . >>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "spctools-discuss" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to [email protected]. >>>>> >>>> To view this discussion on the web visit >>>>> https://groups.google.com/d/msgid/spctools-discuss/9f412926-4391-4995-9896-70b992563cc7n%40googlegroups.com >>>>> <https://groups.google.com/d/msgid/spctools-discuss/9f412926-4391-4995-9896-70b992563cc7n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>>> . >>>>> >>>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/d6b5a41f-74cc-4eb6-875f-7016bb4b14a3n%40googlegroups.com >> <https://groups.google.com/d/msgid/spctools-discuss/d6b5a41f-74cc-4eb6-875f-7016bb4b14a3n%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/CAGJJY%3D8EqQC02QU3vY-74KarUJd%2Bb7P8MOGtbM9CFD6YDp2Lzg%40mail.gmail.com > <https://groups.google.com/d/msgid/spctools-discuss/CAGJJY%3D8EqQC02QU3vY-74KarUJd%2Bb7P8MOGtbM9CFD6YDp2Lzg%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/5816F6CB-4E68-4E99-946F-043F45A03E69%40gmail.com > <https://groups.google.com/d/msgid/spctools-discuss/5816F6CB-4E68-4E99-946F-043F45A03E69%40gmail.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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