I just started having this issue, also on Win10.  Using Anaconda, Spyder 
3.2.8, Python 3.6.5, Qt 5.9.4, PyQt 5.9.2.
This happened after the most recent Qt update, last week or this past 
weekend.  Hitting the F11 key, to maximize the
Spyder window, shows the entire window, but the menu doesn't work (not even 
Alt-F, for the File menu, for example).
I tried downgrading to Qt 5.6.0, but that causes Spyder to crash before 
opening.

Here is the output of 'conda info'
D:\Downloads>conda info

     active environment : None
       user config file : C:\Users\blah\.condarc
 populated config files : C:\Users\blah\.condarc
          conda version : 4.5.0
    conda-build version : 3.8.0
         python version : 3.6.5.final.0
       base environment : D:\Programs\Continuum\Anaconda3  (writable)
           channel URLs : https://repo.anaconda.com/pkgs/main/win-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/free/win-64
                          https://repo.anaconda.com/pkgs/free/noarch
                          https://repo.anaconda.com/pkgs/r/win-64
                          https://repo.anaconda.com/pkgs/r/noarch
                          https://repo.anaconda.com/pkgs/pro/win-64
                          https://repo.anaconda.com/pkgs/pro/noarch
                          https://repo.anaconda.com/pkgs/msys2/win-64
                          https://repo.anaconda.com/pkgs/msys2/noarch
          package cache : D:\Programs\Continuum\Anaconda3\pkgs
                          C:\Users\blah\AppData\Local\conda\conda\pkgs
       envs directories : D:\Programs\Continuum\Anaconda3\envs
                          C:\Users\blah\AppData\Local\conda\conda\envs
                          C:\Users\blah\.conda\envs
               platform : win-64
             user-agent : conda/4.5.0 requests/2.18.4 CPython/3.6.5 
Windows/10 Windows/10.0.16299
          administrator : False
             netrc file : None
           offline mode : False

TIA for looking into this.  I really enjoy using Spyder, and use it daily 
in my workflow.


On Saturday, January 6, 2018 at 4:02:00 PM UTC-6, Jasper van Dorp wrote:
>
> I have a weird screen/mouse issue with Spyder 3 on Windows 10. The menu 
> bar is missing, as are other parts of the Spyder window(s) near the border 
> of the main window. However, even though the menu bar is missing I can 
> still click menu items with the mouse, because it seems like the mouse is 
> miscalibrated in the vertical direction. When I click on point (x,y) it 
> seems to respond to a point that is multiple pixels higher than that (also 
> in the editor window the mouse is off by approx 1 full line which is 
> *really* annoying as you can imagine).
>
> I have tried:
>
> * Factory reset to default
> * Auto high DPI scaling
>
> Both to no avail. I am on a Dell XPS 15 with FHD screen, if that helps. 
> Does anyone have an idea what is going on here? 
>
>
> <https://lh3.googleusercontent.com/-W1jT_csgyyA/WlFFSOq4u0I/AAAAAAAApig/5rQxKlI8Xx00zIa0t5M4Kugyih0nLuvZQCLcBGAs/s1600/Knipsel.png>
>
>

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